PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.D02080.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MYB_related | ||||||||
Protein Properties | Length: 665aa MW: 73414.7 Da PI: 9.16 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.7 | 5.6e-08 | 565 | 614 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r ++T E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ Migut.D02080.2.p 565 RRPFTVAEVEALVQAVEKLGTGRWRDVKLRAFdsaKHRTYVDLKDKWKTL 614 679***********************9988889**************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54236 | 2.29E-6 | 366 | 439 | IPR029071 | Ubiquitin-related domain |
PROSITE profile | PS50053 | 8.916 | 371 | 439 | IPR000626 | Ubiquitin domain |
PROSITE profile | PS51294 | 15.175 | 560 | 619 | IPR017930 | Myb domain |
SMART | SM00717 | 8.9E-8 | 564 | 617 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-10 | 565 | 615 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 8.75E-18 | 566 | 616 | No hit | No description |
SuperFamily | SSF46689 | 6.4E-16 | 566 | 647 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 665 aa Download sequence Send to blast |
MGLMAIKCLP YPEPPDQPGC MFKKKADDNQ QMCAFDLLAT VAGKLLSDGE NNNTSSRKDI 60 PARVEDPVCK VEEDIKPPLD EKSSSGAHNY YERNFLFTEL VSEQNDAISR PASGITTSDC 120 SEKVNSAEQL VNDDCKLRLG IFTPSVDFYG SENESRKETK KIDIANNNNN NNNNNNNNNN 180 SNNNNNSNNN NNTKTMSIRN ASEGFDRKPS GLVCSVDNSV KFPFCKNPVN NINNNGESVN 240 LVNRDDDDNF SERARNKAAA LKSPPRVGDR RFRKLQHCAE RSNYVNRKNN SKRQRSLRDY 300 PFKKRKLYEC SGSVSNSDEG NSSGGIHRQN ENGTNPDGIG SGPTLPEVAA PPTPTSVAGG 360 YVSFRSRNSQ VKLKIKSFRV PELFIEIPET ATVGSLKRTV MEAVNAVLGG GLRVGVVVQG 420 KKIRDDNKTL LQTGISHDSN NSDNTLGFTL EPSPAPPPLL QSSYPESKPL PRYLAAVNNQ 480 QGNNNNNNVA LDTDTVSTPS PAADVPGSSF SNFMESDYDS APSHSRMSLS ESKALVPLCS 540 TKQDALAVVP FRKSKRSESV QRRIRRPFTV AEVEALVQAV EKLGTGRWRD VKLRAFDSAK 600 HRTYVDLKDK WKTLVHTARI SPQQRRGEPV PQELLDRVLT AHAYWSQQQA KQQLKSHPDT 660 CLLL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 3e-54 | 552 | 655 | 4 | 107 | Telomere binding protein TBP1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 268 | 274 | DRRFRKL |
2 | 291 | 306 | KRQRSLRDYPFKKRKL |
3 | 296 | 305 | LRDYPFKKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.D02080.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012827899.1 | 0.0 | PREDICTED: telomere repeat-binding protein 5 isoform X2 | ||||
Refseq | XP_012827900.1 | 0.0 | PREDICTED: telomere repeat-binding protein 5 isoform X2 | ||||
Refseq | XP_012827902.1 | 0.0 | PREDICTED: telomere repeat-binding protein 5 isoform X2 | ||||
Refseq | XP_012827903.1 | 0.0 | PREDICTED: telomere repeat-binding protein 5 isoform X2 | ||||
TrEMBL | A0A022PW09 | 0.0 | A0A022PW09_ERYGU; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07540.1 | 3e-93 | TRF-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Migut.D02080.2.p |