PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D02079.1.p
Common NameLOC105949155, MIMGU_mgv1a002337mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family GRAS
Protein Properties Length: 688aa    MW: 78081.8 Da    PI: 4.8449
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D02079.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS342.28.7e-1053126841373
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l++lL++cA+ v+s+d + a + L++++e+as++gd  qRla++f+ +L+arl ++++ely++l+ ++ +    +e+l+a++++  ++P+ k 
  Migut.D02079.1.p 312 LRTLLISCAQSVASDDRRTAYEQLKQINEHASSTGDVYQRLASVFAIGLQARLGGTGTELYASLTRRKIT---AAEKLKAYQVYLSACPFKKA 401
                       6789*********************************************************999999998...9******************* PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184
                       s   aNq+I   +++++++Hi+Df+i +G+QWp L+q L++R + p +lRiTg++ p++g   +e++eetg rLak++e++gvpfe++v++++
  Migut.D02079.1.p 402 SIGFANQMIGLVASEATTLHIVDFGILYGFQWPVLIQHLSERGGVPLKLRITGIEFPQPGfrPTERVEETGIRLAKYCERFGVPFEYQVIATQ 494
                       ******************************************99999************9******************************999 PP

              GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276
                       ++e+++++++++++gE+laVn+ ++  +llde+v+++  +rd+ L+l++s++P+++v +    ++n++ F++rf eal +ysalfd+++a+++
  Migut.D02079.1.p 495 NWESIKIDDFKIRKGEVLAVNCLFRFGTLLDETVTVDRsPRDACLNLIRSMKPDIFVNAVVSGSYNAPFFVTRFREALFHYSALFDMFDATIS 587
                       ***********************************9988****************************************************** PP

              GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369
                       r++ +r+  E+ + gre+ nv++ceg+er+er et+++W+ r ++aGF+p+pl+++ +k+ ++ +++ +++ +   e+ +++++gWk+r + +
  Migut.D02079.1.p 588 RDNPQRMDFEQDFYGREVINVISCEGSERVERPETYKQWQVRHMRAGFEPMPLNNELMKKLRHKVKNGYNKDFLFGEDGNWMLQGWKGRIICA 680
                       *********************************************************************999********************* PP

              GRAS 370 vSaW 373
                        S+W
  Migut.D02079.1.p 681 SSCW 684
                       **** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.408286665IPR005202Transcription factor GRAS
PfamPF035143.0E-102312684IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MDPRFNIHNT SNGFNFDDEN FDKFSPDYEQ SQNHTNGIIH DYLELNVMDY PDSFALSSTT  60
SYETESPDDQ DSDPVLKFLN QILIEENMEE KSSMFHDPLA LIATEKSLYE VLGQQYPPSP  120
RHPLNYDNAP SFDSFFRSSP EYTNSSNAIG FGENNFSGQN LFTDADSIMQ FKKGMEEANK  180
FLPTVNPLII DLDKYELPPK SDDITPSVIV KVEKEKDETE DSPKGLKGKI RKHHDPDEDD  240
SLDMERSSKQ SAIYVEDVEL SEMFDRVLLC TDTKGKPVSC TGDSDAKLLP TESNGAKSRT  300
KKNETQQDSV DLRTLLISCA QSVASDDRRT AYEQLKQINE HASSTGDVYQ RLASVFAIGL  360
QARLGGTGTE LYASLTRRKI TAAEKLKAYQ VYLSACPFKK ASIGFANQMI GLVASEATTL  420
HIVDFGILYG FQWPVLIQHL SERGGVPLKL RITGIEFPQP GFRPTERVEE TGIRLAKYCE  480
RFGVPFEYQV IATQNWESIK IDDFKIRKGE VLAVNCLFRF GTLLDETVTV DRSPRDACLN  540
LIRSMKPDIF VNAVVSGSYN APFFVTRFRE ALFHYSALFD MFDATISRDN PQRMDFEQDF  600
YGREVINVIS CEGSERVERP ETYKQWQVRH MRAGFEPMPL NNELMKKLRH KVKNGYNKDF  660
LFGEDGNWML QGWKGRIICA SSCWVPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-453166428330GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D02079.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012827889.10.0PREDICTED: scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A022PU050.0A0A022PU05_ERYGU; Uncharacterized protein
STRINGMigut.D02079.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]