PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.D01992.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 244aa MW: 28385.7 Da PI: 5.0553 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.4 | 5.2e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l d+++++G g+W+ +++ g+ R++k+c++rw +yl Migut.D01992.1.p 14 KGLWSPEEDDKLCDYITRFGVGSWSYVPKLAGLERCGKSCRLRWINYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.8 | 3.2e-15 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E++l++ +++ lG++ W+ Ia+ ++ gRt++++k++w++ Migut.D01992.1.p 67 RGKFSQQEEDLILTLHQSLGNR-WAQIAAQLP-GRTDNEIKNFWHS 110 89********************.*********.***********85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-23 | 7 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.298 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.32E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.2E-10 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.58E-7 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.714 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.5E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-14 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.18E-9 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 244 aa Download sequence Send to blast |
MGRHSYCVKQ KLKKGLWSPE EDDKLCDYIT RFGVGSWSYV PKLAGLERCG KSCRLRWINY 60 LRPDLKRGKF SQQEEDLILT LHQSLGNRWA QIAAQLPGRT DNEIKNFWHS SLKKKLPETH 120 ENITQTRTEV INMEDKVLYD PLFLSELQCD PDFSQQNLTR PNYLDNRKTE YSDSSVGNTP 180 STFSWDDEIK NKYESMFDFR IEETNTQTVW EEGNQQIGDF GNYPLALLSE ELSAANFDAF 240 QQM* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-28 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.D01992.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012829321.1 | 0.0 | PREDICTED: transcription factor MYB86-like | ||||
Swissprot | Q8LPH6 | 9e-66 | MYB86_ARATH; Transcription factor MYB86 | ||||
TrEMBL | A0A022PTZ6 | 3e-91 | A0A022PTZ6_ERYGU; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G26660.1 | 7e-68 | myb domain protein 86 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.D01992.1.p |