PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

LBD

Protein Properties

Length: 173aa MW: 18682.9 Da PI: 8.4704

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.D01986.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140.7	4.9e-44	11	109	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrrkC+++C+++pyfp e+p+kfanvhk+FGasnv+kll++l +++reda++sl++eAear+rdPvyG+vg i+ lq+q+++l++e Migut.D01986.1.p 11 PCAACKFLRRKCTPGCIFSPYFPPEEPHKFANVHKIFGASNVSKLLNELLPHQREDAVNSLAFEAEARVRDPVYGCVGAISFLQRQVDRLQKE 103 7******************************************************************************************** PP DUF260 94 lallke 99 l+++++ Migut.D01986.1.p 104 LDAANA 109 *99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.399	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.2E-43	11	108	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MASSTGSYNS PCAACKFLRR KCTPGCIFSP YFPPEEPHKF ANVHKIFGAS NVSKLLNELL 60 PHQREDAVNS LAFEAEARVR DPVYGCVGAI SFLQRQVDRL QKELDAANAD LIRYAAAATQ 120 APPPPPRHRS AVDYGRGGGG GGGFYNQTPS SFTFPYNYHF PTWNGGGVDG NI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-64	2	115	2	115	LOB family transfactor Ramosa2.1
5ly0_B	4e-64	2	115	2	115	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00581	DAP	Transfer from AT5G63090	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.D01986.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012829355.1	1e-126	PREDICTED: protein LATERAL ORGAN BOUNDARIES-like isoform X1
Refseq	XP_012829356.1	1e-126	PREDICTED: protein LATERAL ORGAN BOUNDARIES-like isoform X2
Swissprot	Q9FML4	1e-73	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A022PTZ2	1e-125	A0A022PTZ2_ERYGU; Uncharacterized protein
STRING	Migut.D01986.1.p	1e-126	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	2e-75	LBD family protein

Link Out ? help Back to Top
Phytozome	Migut.D01986.1.p
Entrez Gene	105950535

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]