PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.D01939.1.p | ||||||||
Common Name | MIMGU_mgv1a019599mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 398aa MW: 46066.4 Da PI: 5.3609 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.5 | 3.1e-18 | 186 | 232 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd ll+++v+++G + W++Ia+++ gR +kqc++rw+++l Migut.D01939.1.p 186 KGQWTNEEDRLLIHLVEKHGVRKWSSIAQMLK-GRIGKQCRERWHNHL 232 799****************************9.*************97 PP | |||||||
2 | Myb_DNA-binding | 49.8 | 8e-16 | 240 | 280 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT+eEd l++ +++ G++ W+ Ia+ ++ gRt++++k++w+ Migut.D01939.1.p 240 IWTEEEDRVLIETHAKVGNK-WAEIAKSLP-GRTENSIKNHWN 280 6*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 29.236 | 181 | 236 | IPR017930 | Myb domain |
SMART | SM00717 | 9.8E-18 | 185 | 234 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.07E-31 | 185 | 279 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.3E-18 | 186 | 232 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-27 | 187 | 239 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.12E-15 | 189 | 232 | No hit | No description |
PROSITE profile | PS51294 | 20.424 | 237 | 287 | IPR017930 | Myb domain |
SMART | SM00717 | 9.8E-15 | 237 | 285 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-21 | 240 | 286 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.70E-11 | 241 | 283 | No hit | No description |
Pfam | PF00249 | 2.2E-14 | 241 | 280 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010183 | Biological Process | pollen tube guidance | ||||
GO:0045697 | Biological Process | regulation of synergid differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 398 aa Download sequence Send to blast |
MESATNFTND QNTPPPFPFP NINLKLETLD NEYFSIDNLV SPKNHVVLQE YFQNLDQTPL 60 SVSPFNPYNI ETQSNAFDPF DPFPHTDFGL YEFKPYEENG STIISAAMHD LQGGGFFNFS 120 DQKDSSVEIE TSLKYDDDMM LPLSFLIPDE SSCVSNVDNL EEDGRKRNKN VIKKCDRARK 180 KAKSSKGQWT NEEDRLLIHL VEKHGVRKWS SIAQMLKGRI GKQCRERWHN HLRPDIKKDI 240 WTEEEDRVLI ETHAKVGNKW AEIAKSLPGR TENSIKNHWN ATKRRQFSRR KCRTKWPKPS 300 TLLQNYIKNL HVGKEGSSTE RTINIDDHSR TFHNTSSVSS PPRINPEIEF CKGYEFDDVT 360 DFTFDSFMDD FDADELEFDM PPMCEVKKEV DFFDGIA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 5e-46 | 186 | 286 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 5e-46 | 186 | 286 | 4 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00442 | DAP | Transfer from AT4G18770 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.D01939.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC182577 | 0.0 | AC182577.2 Erythranthe guttata clone MGBa-93F4, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012829185.1 | 1e-150 | PREDICTED: transcription factor MYB98-like | ||||
TrEMBL | A0A022PQD7 | 0.0 | A0A022PQD7_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3150 | 23 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18770.1 | 2e-75 | myb domain protein 98 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.D01939.1.p |