PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D01939.1.p
Common NameMIMGU_mgv1a019599mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 398aa    MW: 46066.4 Da    PI: 5.3609
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D01939.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.53.1e-18186232148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g WT eEd ll+++v+++G + W++Ia+++  gR +kqc++rw+++l
  Migut.D01939.1.p 186 KGQWTNEEDRLLIHLVEKHGVRKWSSIAQMLK-GRIGKQCRERWHNHL 232
                       799****************************9.*************97 PP

2Myb_DNA-binding49.88e-16240280345
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                        WT+eEd  l++ +++ G++ W+ Ia+ ++ gRt++++k++w+
  Migut.D01939.1.p 240 IWTEEEDRVLIETHAKVGNK-WAEIAKSLP-GRTENSIKNHWN 280
                       6*******************.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.236181236IPR017930Myb domain
SMARTSM007179.8E-18185234IPR001005SANT/Myb domain
SuperFamilySSF466892.07E-31185279IPR009057Homeodomain-like
PfamPF002498.3E-18186232IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-27187239IPR009057Homeodomain-like
CDDcd001671.12E-15189232No hitNo description
PROSITE profilePS5129420.424237287IPR017930Myb domain
SMARTSM007179.8E-15237285IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-21240286IPR009057Homeodomain-like
CDDcd001671.70E-11241283No hitNo description
PfamPF002492.2E-14241280IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MESATNFTND QNTPPPFPFP NINLKLETLD NEYFSIDNLV SPKNHVVLQE YFQNLDQTPL  60
SVSPFNPYNI ETQSNAFDPF DPFPHTDFGL YEFKPYEENG STIISAAMHD LQGGGFFNFS  120
DQKDSSVEIE TSLKYDDDMM LPLSFLIPDE SSCVSNVDNL EEDGRKRNKN VIKKCDRARK  180
KAKSSKGQWT NEEDRLLIHL VEKHGVRKWS SIAQMLKGRI GKQCRERWHN HLRPDIKKDI  240
WTEEEDRVLI ETHAKVGNKW AEIAKSLPGR TENSIKNHWN ATKRRQFSRR KCRTKWPKPS  300
TLLQNYIKNL HVGKEGSSTE RTINIDDHSR TFHNTSSVSS PPRINPEIEF CKGYEFDDVT  360
DFTFDSFMDD FDADELEFDM PPMCEVKKEV DFFDGIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C5e-461862864104C-Myb DNA-Binding Domain
1msf_C5e-461862864104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D01939.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1825770.0AC182577.2 Erythranthe guttata clone MGBa-93F4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012829185.11e-150PREDICTED: transcription factor MYB98-like
TrEMBLA0A022PQD70.0A0A022PQD7_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31502349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.12e-75myb domain protein 98