PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D01802.1.p
Common NameLOC105972537, MIMGU_mgv1a022548mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family NAC
Protein Properties Length: 301aa    MW: 34399 Da    PI: 9.3814
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D01802.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.74.5e-5371331129
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhPtdeel+++yL kkv + +++    i +vd++kvePw+Lp k+k++ekewyfF+ rdkky++g r+nrat++gyWkatgkd++++
  Migut.D01802.1.p   7 LPPGFRFHPTDEELITHYLLKKVLDCNFSS-VPIGDVDMNKVEPWELPWKAKQGEKEWYFFCVRDKKYPNGLRTNRATAAGYWKATGKDRAIF 98 
                       79*************************888.56***************999999*************************************** PP

               NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       + +++ vg+kktLvfykgrapkgek++Wv heyrle
  Migut.D01802.1.p  99 R-GKNIVGMKKTLVFYKGRAPKGEKSNWVNHEYRLE 133
                       *.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-595157IPR003441NAC domain
PROSITE profilePS5100556.27157IPR003441NAC domain
PfamPF023652.7E-278132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MDEHITLPPG FRFHPTDEEL ITHYLLKKVL DCNFSSVPIG DVDMNKVEPW ELPWKAKQGE  60
KEWYFFCVRD KKYPNGLRTN RATAAGYWKA TGKDRAIFRG KNIVGMKKTL VFYKGRAPKG  120
EKSNWVNHEY RLEGKFSLQK VTNSSKNDWV ISRVFHKTCG GKKVHISGLT RMDTSGNEMV  180
TSTTTQFTDR FPGNVPCFSS SIVDPVKFQG SLSSNPVFPF ASNPVDYFPG DAFSRGQFPG  240
MDFRFQDPSI FRALMTSYGE KMNQEREMVS VCSHQSESSS ALSNLEIEKK PFQEYYYTWS  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-52416317174NAC domain-containing protein 19
3swm_B4e-52416317174NAC domain-containing protein 19
3swm_C4e-52416317174NAC domain-containing protein 19
3swm_D4e-52416317174NAC domain-containing protein 19
3swp_A4e-52416317174NAC domain-containing protein 19
3swp_B4e-52416317174NAC domain-containing protein 19
3swp_C4e-52416317174NAC domain-containing protein 19
3swp_D4e-52416317174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D01802.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012852951.10.0PREDICTED: NAC domain-containing protein 100-like
SwissprotQ9FLJ21e-97NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A022Q6S20.0A0A022Q6S2_ERYGU; Uncharacterized protein
STRINGMigut.D01802.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.12e-99NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]