PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.D01669.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | bHLH | ||||||||
Protein Properties | Length: 336aa MW: 36742.5 Da PI: 9.4308 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 51.5 | 1.8e-16 | 140 | 186 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRdriN+++ L++l+P+a K +Ka++L +++eY+k+Lq Migut.D01669.1.p 140 IHNQSERRRRDRINEKMKALQKLVPNA-----SKTDKASMLDEVIEYLKQLQ 186 5*************************9.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 17.892 | 136 | 185 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-19 | 139 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.9E-20 | 140 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.76E-16 | 141 | 190 | No hit | No description |
Pfam | PF00010 | 5.6E-14 | 141 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.5E-18 | 142 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MAAPPPCRGG EWRSSSSGVN GERRPANEED KGVKMQNMIS SMAASSSGGN NKRVRTEYSD 60 KVVQVEESAC ASASATFCRD ADTMMTWASF ESPRSLKPPT NADDDSAYQD CSENQDGERM 120 TKGESFRSQS SARRSRAATI HNQSERRRRD RINEKMKALQ KLVPNASKTD KASMLDEVIE 180 YLKQLQSQVH MMSNARNNMP QMVMPNMGMQ QLQMSLLARM AGMGMGMGMG MGMLDVNNLA 240 RNQHVPHSFP QLMHAASPLG GPAPSFVTSP FNMPPVMPPQ TNPLKANDAY NAFIAQQSMN 300 MDFLNKMSAL YGQQAANQMP KKSASSSQPN HGQGD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 144 | 149 | ERRRRD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.D01669.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012853798.1 | 0.0 | PREDICTED: transcription factor UNE10, partial | ||||
TrEMBL | A0A022Q6K2 | 0.0 | A0A022Q6K2_ERYGU; Uncharacterized protein | ||||
STRING | Migut.D01669.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5437 | 17 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61270.2 | 6e-27 | phytochrome-interacting factor7 |
Link Out ? help Back to Top | |
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Phytozome | Migut.D01669.1.p |