PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

TCP

Protein Properties

Length: 275aa MW: 30803.2 Da PI: 8.8248

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.D01635.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	95.1	1.3e-29	54	163	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssaseceae 76 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WL+++ i++l+ + ++ssa Migut.D01635.1.p 54 FGGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLIEATMNDIDKLPPLpmlptnfpqfhhqpitidNQSSA------ 140 689*************************************************************66666555443333322211111...... PP TCP 77 sssssasnsssg..............k 89 +++ n+s + + Migut.D01635.1.p 141 ---NNTTNQS-SlshflasnypfarlD 163 ...1111111.1234443322232221 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	28.31	56	114	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	3.2E-27	56	168	IPR005333	Transcription factor, TCP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0030154	Biological Process	cell differentiation
GO:0045962	Biological Process	positive regulation of development, heterochronic

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MTMNPKEKDF LAKKELCGDG NNKKIIATST IPSSSRQWSS THRNPRIVRV SRAFGGKDRH 60 SKVCTVRGLR DRRIRLSVPT AIQLYDLQDR LGLSQPSKVV DWLIEATMND IDKLPPLPML 120 PTNFPQFHHQ PITIDNQSSA NNTTNQSSLS HFLASNYPFA RLDKERDQEN QENDIQEGFG 180 GIFAQNLFPL TNINSQSSFA NLPFNNAYNF HWDPASLSLS QFGGGYSFTT NQTAVDEENN 240 NNNLSSNNSQ LYFCPSASNI VPSVIPNNSR THRT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	7e-20	61	115	1	55	Putative transcription factor PCF6
5zkt_B	7e-20	61	115	1	55	Putative transcription factor PCF6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00008	PBM	Transfer from 496250	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.D01635.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012854041.1	0.0	PREDICTED: transcription factor TCP5
Swissprot	Q9FME3	2e-45	TCP5_ARATH; Transcription factor TCP5
TrEMBL	A0A022Q7L4	1e-116	A0A022Q7L4_ERYGU; Uncharacterized protein
STRING	Migut.D01635.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA821	24	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	9e-47	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5

Link Out ? help Back to Top
Phytozome	Migut.D01635.1.p

Publications ? help Back to Top
Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]