PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D01622.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MIKC_MADS
Protein Properties Length: 174aa    MW: 20262.3 Da    PI: 10.2207
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D01622.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.71.8e-29959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krienk+nrqvtfskRr g+lKKA+E+SvLCda+v +i+fs++gkl ey+s
  Migut.D01622.1.p  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDADVGLIVFSTKGKLSEYAS 59
                      79***********************************************86 PP

2K-box70.45.5e-2481161787
             K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                       k+ + +  +s++ e+akLk+++e Lqr+q+h++G++L++Ls +e q+Le+  e slk+ R++ n+l+ e+i elqkk +++
  Migut.D01622.1.p  81 KEPDLESPASWSLEHAKLKARMEVLQRNQKHYMGDELDNLSTRERQNLEHPPEGSLKHTRARENQLMNESITELQKKVRKI 161
                       4445566789*******************************************************************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.399161IPR002100Transcription factor, MADS-box
SMARTSM004327.0E-39160IPR002100Transcription factor, MADS-box
CDDcd002654.41E-40276No hitNo description
SuperFamilySSF554551.01E-33291IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-30323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.32388173IPR002487Transcription factor, K-box
PfamPF014861.5E-1689161IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD ADVGLIVFST KGKLSEYASD  60
SSMERILERY DRYSYAEKKM KEPDLESPAS WSLEHAKLKA RMEVLQRNQK HYMGDELDNL  120
STRERQNLEH PPEGSLKHTR ARENQLMNES ITELQKKVRK ITYFTFTVTL LTM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-21174173Myocyte-specific enhancer factor 2B
1tqe_Q1e-21174173Myocyte-specific enhancer factor 2B
1tqe_R1e-21174173Myocyte-specific enhancer factor 2B
1tqe_S1e-21174173Myocyte-specific enhancer factor 2B
6byy_A2e-21174173MEF2 CHIMERA
6byy_B2e-21174173MEF2 CHIMERA
6byy_C2e-21174173MEF2 CHIMERA
6byy_D2e-21174173MEF2 CHIMERA
6bz1_A2e-21174173MEF2 CHIMERA
6bz1_B2e-21174173MEF2 CHIMERA
6bz1_C2e-21174173MEF2 CHIMERA
6bz1_D2e-21174173MEF2 CHIMERA
6c9l_A1e-21174173Myocyte-specific enhancer factor 2B
6c9l_B1e-21174173Myocyte-specific enhancer factor 2B
6c9l_C1e-21174173Myocyte-specific enhancer factor 2B
6c9l_D1e-21174173Myocyte-specific enhancer factor 2B
6c9l_E1e-21174173Myocyte-specific enhancer factor 2B
6c9l_F1e-21174173Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D01622.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012853820.11e-103PREDICTED: agamous-like MADS-box protein AGL8 homolog
SwissprotQ401702e-85AGL8_SOLLC; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A2G9H5722e-89A0A2G9H572_9LAMI; MADS box transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.16e-76AGAMOUS-like 8