PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.D01311.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 203aa MW: 22870.9 Da PI: 8.1677 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 67.2 | 1.6e-21 | 26 | 74 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ie ks qvtfskRr+g++ KA+E+SvLC+ae+a+++ s+ +k+y y Migut.D01311.1.p 26 KKIEKKSSLQVTFSKRRTGLFRKASEISVLCGAEIAILVQSPANKIYSY 74 68*********************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 7.46E-27 | 18 | 88 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.7E-32 | 18 | 77 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 26.31 | 18 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-20 | 20 | 40 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.9E-22 | 27 | 74 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-20 | 40 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-20 | 55 | 76 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MENINNNKEL TICKKKTMGR RKIEIKKIEK KSSLQVTFSK RRTGLFRKAS EISVLCGAEI 60 AILVQSPANK IYSYGHPSVE TLLHRYQTGG AGGSSSAGLS IIPYSEDGRN KYDEAVKKLE 120 IVKRSMKQES SGISSTRFWW DEPMEGMELY ELEEYVEAME ALKDNVSRRV EEMEKQKSNA 180 ASASTSDLDP SFQINYQDFD GF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 5e-15 | 18 | 86 | 1 | 69 | MEF2C |
5f28_B | 5e-15 | 18 | 86 | 1 | 69 | MEF2C |
5f28_C | 5e-15 | 18 | 86 | 1 | 69 | MEF2C |
5f28_D | 5e-15 | 18 | 86 | 1 | 69 | MEF2C |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.D01311.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012833853.1 | 1e-146 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A022RJL0 | 1e-133 | A0A022RJL0_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13821 | 4 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65360.1 | 8e-23 | AGAMOUS-like 23 |
Link Out ? help Back to Top | |
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Phytozome | Migut.D01311.1.p |