PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.D01296.1.p | ||||||||
Common Name | LOC105951641, MIMGU_mgv1a024673mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | NAC | ||||||||
Protein Properties | Length: 225aa MW: 25687.9 Da PI: 10.0597 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 117 | 1.9e-36 | 14 | 143 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgk..rknratksgyWkatgkdke 91 lppGfrF+Ptdee+v +yL++k+ +++l+++ i+e++i++++P ++p ++++e yfFs+++ ++++g+ ++++at +gyWkatg+ k+ Migut.D01296.1.p 14 LPPGFRFQPTDEEIVFQYLARKTFSHPLPAHILIPEINIFTLNPFEFP---GNSDEERYFFSNKEGNNRKGNtvQSSKATCTGYWKATGSAKR 103 79****************************888***************...457899*******999987663367779************** PP NAM 92 vlskkgel..vglkktLvfy..kgrapkgektdWvmheyr 127 + ++k++ +g++k+Lvfy k++++++ +t+W+mhey Migut.D01296.1.p 104 INCSKKAMpiIGIRKSLVFYktKKNSNRAFRTNWTMHEYF 143 **97555467**********4334556667*********6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-40 | 9 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 42.354 | 14 | 178 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-22 | 15 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MDMMKFVGEG GRKLPPGFRF QPTDEEIVFQ YLARKTFSHP LPAHILIPEI NIFTLNPFEF 60 PGNSDEERYF FSNKEGNNRK GNTVQSSKAT CTGYWKATGS AKRINCSKKA MPIIGIRKSL 120 VFYKTKKNSN RAFRTNWTMH EYFIAVSENY SIQHKNNSLQ AGTLARIGNW TLCRIFLKKR 180 RRNSVAASED YDSDYYKHRN IDLNMSDTDS SSASSSSSPH SDDH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-28 | 14 | 179 | 15 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.D01296.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012830545.1 | 1e-169 | PREDICTED: NAC transcription factor 29-like | ||||
TrEMBL | A0A022RTI2 | 1e-168 | A0A022RTI2_ERYGU; Uncharacterized protein | ||||
STRING | Migut.D01296.1.p | 1e-169 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1387 | 23 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 2e-48 | NAC domain containing protein 83 |
Link Out ? help Back to Top | |
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Phytozome | Migut.D01296.1.p |
Entrez Gene | 105951641 |