PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D01190.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family ARF
Protein Properties Length: 725aa    MW: 81484.2 Da    PI: 6.2945
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D01190.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.36.2e-23109210199
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f+k+lt sd++++g +++ +++a+e+      + + + +++l+ +d++g++W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + 
  Migut.D01190.1.p 109 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RG 198
                       99*****************************7333.34459************************************************..44 PP

                       SEE..EEEEE-S CS
                B3  88 sefelvvkvfrk 99 
                       +++el+ +v+r+
  Migut.D01190.1.p 199 ENGELRAGVRRA 210
                       999999999985 PP
2Auxin_resp1218.9e-40235317183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       a+ha++tk++F+v+Y+Pr+s++eF+v+++++++++k+++s+GmRfkm+fe+e+++e+r++Gt+vg++d++p rWp+SkWr+Lk
  Migut.D01190.1.p 235 AWHAIQTKTMFTVYYKPRTSPAEFIVPYDEYMESVKSNYSIGMRFKMKFEGEEAPEQRYTGTIVGIEDAHPKRWPESKWRCLK 317
                       89*******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.1E-41104224IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-40105238IPR015300DNA-binding pseudobarrel domain
CDDcd100174.52E-20107209No hitNo description
PROSITE profilePS5086311.575109211IPR003340B3 DNA binding domain
PfamPF023626.6E-21109210IPR003340B3 DNA binding domain
SMARTSM010191.9E-21109211IPR003340B3 DNA binding domain
PfamPF065078.2E-37235317IPR010525Auxin response factor
PfamPF023097.8E-9604701IPR033389AUX/IAA domain
SuperFamilySSF542772.16E-10606690No hitNo description
PROSITE profilePS5174522.291613695IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    Send to blast
MDASEVSIDG HNDAEGCNLA HGNSGAGKVD AETALYTELW RACAGPLVTV PREHELVFYF  60
PQGHIEQAEP DTDEVFAQVT LMPEPNQDEN AVKKEPPPAP PPRFNVHSFC KTLTASDTST  120
HGGFSVLRRH ADECLPPLDM SRQPPTQELV AKDLHGNEWR FRHIFRGQPR RHLLQSGWSV  180
FVSSKRLVAG DAFIFLRGEN GELRAGVRRA MRQQSNAPSS VISSHSMHLG VLATAWHAIQ  240
TKTMFTVYYK PRTSPAEFIV PYDEYMESVK SNYSIGMRFK MKFEGEEAPE QRYTGTIVGI  300
EDAHPKRWPE SKWRCLKVRW DETSAIPRPD RVSPWKTEHA LSPPALNPLP LPRHKRPRSS  360
VLPSSPDSSV LTREASLKMT VVETSSEKPF LWDPSLDDDK IDVSASRRFT DLLSGFDSKN  420
NSPRDFVSHF SKRQRQGEFS FDDNNNIWST TTPSSSSYGL SLNIMESSSK NNNGEFRYGD  480
FGDYSNYPQA NWFMMPPPIS PYLQIPQARS REILPKSLFA QQKHDAIVKP KEGNNCKLFG  540
YPLVSNSAPS DQAFLHRNPT VEPSDCTKNA VHSNQSPVFE SDQRSDLSKG SKVVDYPVAT  600
IEKESKGHSA STRSCTKVHK QGSALGRSVD LTKFENYDGL ISELDTIFEF NGELKDRNKN  660
WLVVYIDDED EMMLVGDDPW EEFCGMVRKI LILTKEEVQR MNPATLSSKG EENSSMPLSS  720
PDDC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-149193381353Auxin response factor 1
4ldw_A1e-149193381353Auxin response factor 1
4ldw_B1e-149193381353Auxin response factor 1
4ldx_A1e-149193381353Auxin response factor 1
4ldx_B1e-149193381353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs) (By similarity). Could act as transcriptional activator or repressor. Involved in the control of fruit ripening process. Regulates expression of a number of ripening regulators, transcription factors, and ethylene biosynthesis and signaling components (PubMed:26716451, PubMed:26959229). May act as a transcriptional repressor of auxin-responsive genes (PubMed:26716451). {ECO:0000255|RuleBase:RU004561, ECO:0000269|PubMed:26716451, ECO:0000269|PubMed:26959229}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D01190.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By tomato fruit ripening. Expression is up-regulated by plant hormone auxin in tomato fruits. {ECO:0000269|PubMed:26716451}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012852739.10.0PREDICTED: LOW QUALITY PROTEIN: auxin response factor 2-like
SwissprotK4DF010.0ARF2B_SOLLC; Auxin response factor 2B
TrEMBLA0A022QBB20.0A0A022QBB2_ERYGU; Auxin-responsive protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26182444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Breitel DA, et al.
    AUXIN RESPONSE FACTOR 2 Intersects Hormonal Signals in the Regulation of Tomato Fruit Ripening.
    PLoS Genet., 2016. 12(3): p. e1005903
    [PMID:26959229]