PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.D00656.1.p

Common Name

MIMGU_mgv1a020605mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

SRS

Protein Properties

Length: 366aa MW: 37711 Da PI: 8.3519

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.D00656.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	208.7	1.5e-64	144	303	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaes 96 +t+sC+dCGnqakkdC h+RCRtCCksrg+dC+th+kstWvpaa+rrerq a +++a +s++++++k++r +++++s+t+ s++++ Migut.D00656.1.p 144 TTTSCHDCGNQAKKDCPHRRCRTCCKSRGYDCTTHLKSTWVPAARRRERQVIGGANTATAGSSQSTSSAKKPRLG--GASQTTSHTSNSNNTP 234 5789*************************************************99999999999999999975..6777777888889999 PP DUF702 97 kkeletss...........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++++t+s lP +v+++avf+cvrv++vddge+e+aYq++v igGhvfkG+LydqG ++ Migut.D00656.1.p 235 PRSFDTTSshhqdasfkesLPGQVHAPAVFKCVRVTAVDDGEDEYAYQAVVRIGGHVFKGFLYDQGSSN 303 9999998889999999************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	9.1E-60	145	302	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.8E-25	147	189	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	4.0E-29	254	300	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MWSSTTATAT RHISCGLPPE FYFVAPASSF QHHHQETGAA GGTTINFDPH SLGVIPLLTS 60 TPSLGGGAGG GGSAAADDQD ALNNNSRNRG GMQLWQHQLG QQNSPAYFKK PTINIDHSNL 120 LHHGGGGGGN IGGSSSSMGG GGGTTTSCHD CGNQAKKDCP HRRCRTCCKS RGYDCTTHLK 180 STWVPAARRR ERQVIGGANT ATAGSSQSTS SAKKPRLGGA SQTTSHTSNS NNTPPRSFDT 240 TSSHHQDASF KESLPGQVHA PAVFKCVRVT AVDDGEDEYA YQAVVRIGGH VFKGFLYDQG 300 SSNSEGRSEG GFPNMSELHL GGSGGGRNAG ASSSQHTFLD AATTNMFAAS GGALLGGSSY 360 GNQIN*

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MWSSTTATAT RHISCGLPPE FYFVAPASSF QHHHQETGAA GGTTINFDPH SLGVIPLLTS  60
TPSLGGGAGG GGSAAADDQD ALNNNSRNRG GMQLWQHQLG QQNSPAYFKK PTINIDHSNL  120
LHHGGGGGGN IGGSSSSMGG GGGTTTSCHD CGNQAKKDCP HRRCRTCCKS RGYDCTTHLK  180
STWVPAARRR ERQVIGGANT ATAGSSQSTS SAKKPRLGGA SQTTSHTSNS NNTPPRSFDT  240
TSSHHQDASF KESLPGQVHA PAVFKCVRVT AVDDGEDEYA YQAVVRIGGH VFKGFLYDQG  300
SSNSEGRSEG GFPNMSELHL GGSGGGRNAG ASSSQHTFLD AATTNMFAAS GGALLGGSSY  360
GNQIN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.D00656.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012835509.1	0.0	PREDICTED: uncharacterized protein LOC105956208
Swissprot	Q94CK9	9e-73	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A022S1S6	0.0	A0A022S1S6_ERYGU; Uncharacterized protein
STRING	Migut.D00656.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7655	23	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	6e-61	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Migut.D00656.1.p

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]