PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.D00287.1.p | ||||||||
Common Name | MIMGU_mgv1a002681mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | bHLH | ||||||||
Protein Properties | Length: 653aa MW: 71249.1 Da PI: 6.1479 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43 | 8.1e-14 | 474 | 519 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h +ErrRR+r+N++f Lr+l+P +K++Ka+iL +++Y+k+L Migut.D00287.1.p 474 NHVLAERRRRERLNEKFIALRSLVPFI-----TKMDKASILGDTIDYVKQL 519 7999**********************7.....6****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.2E-54 | 14 | 198 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.765 | 470 | 519 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.1E-18 | 471 | 532 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-17 | 474 | 534 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-11 | 474 | 519 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-17 | 476 | 525 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.04E-7 | 484 | 524 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 653 aa Download sequence Send to blast |
MDVSPPPPAR KSRLQSVLRA AVQTVEWTYS LFWQLSPQQG ILVWREGYYN GAIKTRKTIQ 60 PTEVTTEEAT VHRSHQLREL YESLSATDAG SSQQSRRPSA ALSPEDLTES EWFYLMCVSF 120 SFPPGVGLPG KAYSKRQHIW LTKASDADSK AFSRAILAKT AGIQTVVCIP LLDGVVELGT 180 TEMVQEDTGI IRRVKSFFNN NNGGQDPNPP RPALSEHSTS NPPTSSEPRF PSSPAAAVVP 240 PTHEPTFFEM GSHVAEEGDD DDEVAETGGI GSLSPAENTV DADGTTHSTG HEPMQVDIII 300 SENIIRAGTP DDDCSNDLDS NFHLLAVSPP GISTENHPGA GGGLDKPGIS VQTWQLKDDP 360 MTSNIIPPHS AGLPSFDLVV QEDTHYSQTV WSILETQSNR WSKQSSSTTM SSSGAVSAFS 420 RWCRRKNLLV GGGSSQWALK YILFTVPLLH KMSTACNNIK ETTNNPPPDE LSANHVLAER 480 RRRERLNEKF IALRSLVPFI TKMDKASILG DTIDYVKQLL KRIQELEYSN TNNKHRSVAA 540 CSGKEKRKMK VVAEGGGSGG GTVAEEVAQV EVSIIESDAL VEIQCVQNEG LLLDVMQVLA 600 QFGIHVTTVQ SSLSNGIFTA ELRAKVKENV NGRKPSIVEV KRSIHQIIIL HR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 4e-27 | 7 | 201 | 2 | 195 | Transcription factor MYC3 |
4rqw_B | 4e-27 | 7 | 201 | 2 | 195 | Transcription factor MYC3 |
4rs9_A | 4e-27 | 7 | 201 | 2 | 195 | Transcription factor MYC3 |
4yz6_A | 4e-27 | 7 | 201 | 2 | 195 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 478 | 483 | ERRRRE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.D00287.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012832485.1 | 0.0 | PREDICTED: basic helix-loop-helix protein A | ||||
Swissprot | E3SXU4 | 0.0 | BHLHW_PEA; Basic helix-loop-helix protein A | ||||
TrEMBL | A0A022S3S4 | 0.0 | A0A022S3S4_ERYGU; Uncharacterized protein | ||||
STRING | Migut.D00287.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9028 | 20 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09820.1 | 4e-86 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.D00287.1.p |
Publications ? help Back to Top | |||
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