PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D00186.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family NF-YB
Protein Properties Length: 172aa    MW: 19081.1 Da    PI: 6.7909
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D00186.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB162.84.9e-5136131297
             NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                       +eqdr+lPianv+rimk++lP  akisk+aket+qec+sefi+fvt+eas+kc++ekrkt+ngdd++wal++lGf+dy ++lk yl +yr++e
  Migut.D00186.1.p  36 KEQDRLLPIANVGRIMKQILPPSAKISKEAKETMQECASEFIGFVTGEASHKCHKEKRKTVNGDDVCWALSNLGFDDYSDSLKRYLIRYRDAE 128
                       89******************************************************************************************* PP

             NF-YB  95 gek 97 
                       ge+
  Migut.D00186.1.p 129 GER 131
                       997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.6E-4834151IPR009072Histone-fold
SuperFamilySSF471136.93E-3738149IPR009072Histone-fold
PfamPF008081.7E-2541105IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.0E-166987No hitNo description
PRINTSPR006154.0E-1688106No hitNo description
PRINTSPR006154.0E-16107125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MVDKQETHLK HSKNNYAALS TSADHHRYET TYDESKEQDR LLPIANVGRI MKQILPPSAK  60
ISKEAKETMQ ECASEFIGFV TGEASHKCHK EKRKTVNGDD VCWALSNLGF DDYSDSLKRY  120
LIRYRDAEGE RANQNKAAGG GGGSGGGGDR DDEVDAPPLP FSFNLMDKRR N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-4136126292Transcription factor HapC (Eurofung)
4g92_B2e-4136126292Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D00186.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012833303.11e-127PREDICTED: nuclear transcription factor Y subunit B-4
SwissprotO822485e-55NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A022S5M41e-96A0A022S5M4_ERYGU; Uncharacterized protein (Fragment)
STRINGMigut.D00186.1.p1e-127(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.14e-57nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]