PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D00054.2.p
Common NameMIMGU_mgv1a006767mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB_related
Protein Properties Length: 448aa    MW: 50003.8 Da    PI: 9.9967
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D00054.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07128170346
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +WT+eE ++l d+++++  + + ++a +++ ++t +++k+r+++
  Migut.D00054.2.p 128 AWTKEETDQLFDLCERFNLR-FIAVADRFPSTKTVEELKDRYYS 170
                       7******************9.*********99**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF162828.4E-28101175IPR032563DAMP1, SANT/Myb-like domain
SuperFamilySSF466898.58E-6125172IPR009057Homeodomain-like
SMARTSM007176.8E-7125174IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-5128172IPR009057Homeodomain-like
PfamPF054991.8E-7314379IPR008468DNA methyltransferase 1-associated 1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0000812Cellular ComponentSwr1 complex
GO:0035267Cellular ComponentNuA4 histone acetyltransferase complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MDAKDILGLP KNLPIQEKKS KPPKESQRKP DGISREVYAL TGGLAPLMPA IDVNQLKRKA  60
QSENEKITWQ WLPFTNSARK DNLQLYHWVR VVNGNPPTGD YSFAKCNKSA DIIKYTDEEY  120
EKYLTDPAWT KEETDQLFDL CERFNLRFIA VADRFPSTKT VEELKDRYYS VSRAILIARA  180
PSPGDVSAHP LVKDVYNATQ DTERKRALNL LLSHTKHQER RDVEVLAHAK RISEARKTIK  240
ASANLVLPVL SDTGTLGADK PITTADTVNP STNSEFPSST TTPVSETASV VASLRMLRVY  300
LRTYSLEQMV QAASSSAGLR TIKRVEQTLQ DLGVNLKPKV PTKAVCAEHL ELRKEILTLL  360
NLQKQLQYKE AEGSSLRDGT FTETPGTPPK QSVRAVDLDR TFTPDSLSTG GERFGKREQK  420
RKGPGRLAEA PSSPAQSKRP RKYKASD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3hm5_A4e-19100184491DNA methyltransferase 1-associated protein 1
4iej_A4e-19100184491DNA methyltransferase 1-associated protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D00054.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012834460.10.0PREDICTED: SWR1-complex protein 4 isoform X2
SwissprotQ8VZL60.0SWC4_ARATH; SWR1-complex protein 4
TrEMBLA0A022S3A50.0A0A022S3A5_ERYGU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47210.10.0MYB_related family protein
Publications ? help Back to Top
  1. Gómez-Zambrano Á, et al.
    Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes.
    Mol Plant, 2018. 11(6): p. 815-832
    [PMID:29604400]