PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.C01360.1.p | ||||||||
Common Name | LOC105974378, MIMGU_mgv1a015981mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | ERF | ||||||||
Protein Properties | Length: 140aa MW: 15173.9 Da PI: 9.0836 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52 | 1.7e-16 | 26 | 75 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +ykG+r++k +g+Wv+eIr+p g + r +lg++ t+e Aa a++ a +l+g Migut.C01360.1.p 26 KYKGIRRRK-WGKWVSEIRVP---G-TpERLWLGSYATPEAAAVAHDVAFYCLRG 75 8*****998.**********8...3.69************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.8E-9 | 26 | 75 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.98E-23 | 26 | 85 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.4E-25 | 26 | 85 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-27 | 26 | 91 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-17 | 26 | 84 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.298 | 26 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-8 | 27 | 38 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-8 | 49 | 65 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MMSSSSDECG NYRNNDEAAA SSSQNKYKGI RRRKWGKWVS EIRVPGTPER LWLGSYATPE 60 AAAVAHDVAF YCLRGNSSPK NLNFPLVLPA GARVGMSPRS VQKAASDAGL AIDARLSDGK 120 SSQRRSGEEY LDISVEDYL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-12 | 19 | 94 | 7 | 81 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00158 | DAP | Transfer from AT1G22810 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.C01360.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012854922.1 | 9e-99 | PREDICTED: ethylene-responsive transcription factor ERF020 | ||||
Swissprot | O80542 | 1e-41 | ERF19_ARATH; Ethylene-responsive transcription factor ERF019 | ||||
Swissprot | Q9C9I8 | 1e-41 | ERF20_ARATH; Ethylene-responsive transcription factor ERF020 | ||||
TrEMBL | A0A022Q295 | 2e-97 | A0A022Q295_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9494 | 20 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71520.1 | 4e-44 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.C01360.1.p |
Entrez Gene | 105974378 |
Publications ? help Back to Top | |||
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