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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.C01099.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MYB | ||||||||
Protein Properties | Length: 282aa MW: 31907.6 Da PI: 10.1652 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.6 | 6.1e-18 | 24 | 69 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+q+G+ +W++Ia +++ gR++k+c++rw++ Migut.C01099.1.p 24 RGHWRPAEDEKLRQLVEQFGPQNWNSIADKLQ-GRSGKSCRLRWFNQ 69 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 55 | 1.9e-17 | 76 | 119 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r +++ eE+e+l+ a++ +G++ W++I+r ++ gRt++ +k++w+ Migut.C01099.1.p 76 RRPFSDEEEERLLAAHAIHGNK-WALISRIFP-GRTDNAVKNHWHV 119 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.508 | 15 | 70 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.11E-29 | 23 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-14 | 23 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-17 | 24 | 69 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-27 | 25 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.56E-13 | 27 | 68 | No hit | No description |
PROSITE profile | PS51294 | 26.883 | 71 | 125 | IPR017930 | Myb domain |
SMART | SM00717 | 6.9E-15 | 75 | 123 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-14 | 76 | 118 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.22E-11 | 78 | 118 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-20 | 78 | 124 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MDETAACGGG GSSGDPIIRT TSPRGHWRPA EDEKLRQLVE QFGPQNWNSI ADKLQGRSGK 60 SCRLRWFNQL DPRINRRPFS DEEEERLLAA HAIHGNKWAL ISRIFPGRTD NAVKNHWHVI 120 MARKQREKSN LISGKISDDQ STKLSRSTTY VFRRKKSRFQ EDNYGSKISF ENGGIFDSHK 180 DKIFSLSSGS YTSPWPNYNS SANYSDLFGP KNNNPRMLAT IPFNHRLSNF SSSTPFISYL 240 ECGESSFSFS KTRTSGENNK QIEEKSKKDV PFIDFLGVGI L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-29 | 24 | 124 | 7 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.C01099.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012843295.1 | 0.0 | PREDICTED: trichome differentiation protein GL1-like | ||||
TrEMBL | A0A022QUW6 | 1e-170 | A0A022QUW6_ERYGU; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1784 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 2e-65 | myb domain protein 52 |
Link Out ? help Back to Top | |
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Phytozome | Migut.C01099.1.p |