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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.C01017.1.p | ||||||||
Common Name | LOC105950763, MIMGU_mgv1a026923mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | Trihelix | ||||||||
Protein Properties | Length: 605aa MW: 66842.7 Da PI: 6.8075 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 95.8 | 4.1e-30 | 51 | 135 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m+ ++r+++lk+plW+evs+km+e gf+r pk+Ckek+en+ k++k++k+g++ + ++ +++++fdqlea Migut.C01017.1.p 51 RWPRQETLALLKIRSDMDVAFRDASLKGPLWDEVSRKMAELGFQRHPKKCKEKFENVYKYHKRTKDGRSTK--PDGKSYRFFDQLEA 135 8********************************************************************85..66678*******85 PP | |||||||
2 | trihelix | 102.5 | 3.2e-32 | 416 | 501 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev aLi++r++++ ++ ++ k+plWee+s+ m + g++rs+k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+qlea Migut.C01017.1.p 416 RWPKAEVEALINLRTRLDLKYMENGPKGPLWEEISAEMGKIGYKRSSKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHQLEA 501 8********************************************************************97.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.38 | 48 | 110 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.493 | 50 | 108 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 2.1E-19 | 50 | 136 | No hit | No description |
CDD | cd12203 | 3.57E-24 | 50 | 115 | No hit | No description |
SMART | SM00717 | 8.2E-5 | 413 | 475 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 7.561 | 415 | 473 | IPR017877 | Myb-like domain |
CDD | cd12203 | 5.02E-26 | 415 | 480 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.2E-5 | 415 | 472 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 2.5E-21 | 415 | 502 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 605 aa Download sequence Send to blast |
MMLGVSGGAA AAEAVEAHES GGASGGSGSS SVPGGAIEES ERSGGGGGGN RWPRQETLAL 60 LKIRSDMDVA FRDASLKGPL WDEVSRKMAE LGFQRHPKKC KEKFENVYKY HKRTKDGRST 120 KPDGKSYRFF DQLEALENTP PNSISFTPPP PPPRPQPPAA MAVAAPANGT PNIVPMPSIS 180 PTPLSIVHPN NTQKTPINNP SSFQPMLSQL PPPLQHPQSN FQPSSHPYNN LPTGQLLNST 240 SSSSSTSSDE DIIQRRRGKK RKWKDYFERL MKDVVHKQEE LQKKFLEALE KRERDRMARD 300 EAWRVQETAR INREHELLLH ERSISAAKDA AVIAFLQKAT HSDDRAPPEN NPPPPQQPPP 360 RRQQPPAMPP PPPAAVAAPA PAAPVQQAGP LVVVPTEQAG PLEVAVIPSG GGSASRWPKA 420 EVEALINLRT RLDLKYMENG PKGPLWEEIS AEMGKIGYKR SSKRCKEKWE NINKYFKKVK 480 ESNKRRPEDS KTCPYFHQLE AIYKERANHS SNNHGPSTFE HESPMLPIMA RPEQQWPLSQ 540 QQLEKHDSVL IMHGHDQDGS ENNEHEEEDD EEEEEEEDEG GGAGGGYEIM VNKQQPSSVA 600 NTAE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 253 | 261 | QRRRGKKRK |
2 | 255 | 261 | RRGKKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.C01017.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012829582.1 | 0.0 | PREDICTED: trihelix transcription factor GT-2-like | ||||
TrEMBL | A0A022PPW3 | 0.0 | A0A022PPW3_ERYGU; Uncharacterized protein | ||||
STRING | Migut.C01017.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2402 | 24 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 2e-50 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.C01017.1.p |
Entrez Gene | 105950763 |