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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.C00747.1.p | ||||||||
Common Name | MIMGU_mgv1a024515mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MYB_related | ||||||||
Protein Properties | Length: 100aa MW: 11377.7 Da PI: 10.0318 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.7 | 1.7e-10 | 13 | 56 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WTt +++ +a +++ ++ +W+ Iar +g g+++ +++ ++ Migut.C00747.1.p 13 SWTTKQNKQFEEALAKYDKEtpdRWHNIARSVG-GKSADEVRRHY 56 7******************9*************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.951 | 9 | 64 | IPR017884 | SANT domain |
SMART | SM00717 | 3.3E-9 | 10 | 62 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.58E-13 | 12 | 67 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.9E-8 | 13 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-6 | 13 | 66 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.97E-6 | 20 | 60 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 100 aa Download sequence Send to blast |
MASSSMTSSR SSSWTTKQNK QFEEALAKYD KETPDRWHNI ARSVGGKSAD EVRRHYEALV 60 KDIMQIETDQ VPIPNYRAIA NTRGYSNEQR LMKNLKLQG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 6e-28 | 6 | 98 | 1 | 93 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.C00747.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011083673.1 | 1e-56 | protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 1e-33 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A022RYN9 | 3e-68 | A0A022RYN9_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA202 | 24 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 3e-32 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Migut.C00747.1.p |