PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.C00646.1.p

Common Name

LOC105966486, MIMGU_mgv1a017753mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

Dof

Protein Properties

Length: 268aa MW: 27501.2 Da PI: 5.2952

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.C00646.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.7	2.3e-37	24	81	5	62
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + +cprCdst+tkfCyynny+lsqPr+fCk+CrryWt+GGalr vPvGgg+rk+ +ss Migut.C00646.1.p 24 HPPCPRCDSTDTKFCYYNNYNLSQPRHFCKSCRRYWTRGGALRKVPVGGGTRKSSSSS 81 568**************************************************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	28.714	25	79	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.9E-32	25	79	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-21	27	73	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	27	63	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MDPTTTPIPQ PESGGRLFSG TAEHPPCPRC DSTDTKFCYY NNYNLSQPRH FCKSCRRYWT 60 RGGALRKVPV GGGTRKSSSS SNKRRRLATP TAATATPRTS SSNNNLVVSC SSENDATAQS 120 RYTDPVVPNT GPGPGSGPGS GYEHGVGVNL NEDAVAESGS VLSCWWSNTA GQMGSGGGLF 180 PFVDGYGLGI GSGMGCGPDV LEWPPLEQVA MGGGDTDAAV VSGESTPVCS TWQMGGGGGE 240 GGGAAETGDY FSWPDLAIST PAAKDVK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	82	86	KRRRL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.C00646.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC083942	2e-47	AC083942.8 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0002D01, from chromosome 3, complete sequence.
GenBank	AC137698	2e-47	AC137698.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0014A21, from chromosome 3, complete sequence.
GenBank	AP014959	2e-47	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBank	CP012611	2e-47	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012846496.1	0.0	PREDICTED: dof zinc finger protein DOF1.6-like
TrEMBL	A0A022RYJ7	0.0	A0A022RYJ7_ERYGU; Uncharacterized protein
STRING	Migut.C00646.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	8e-29	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Migut.C00646.1.p
Entrez Gene	105966486