PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.C00561.1.p | ||||||||
Common Name | MIMGU_mgv1a010846mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | bHLH | ||||||||
Protein Properties | Length: 313aa MW: 33715.2 Da PI: 4.6918 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 49.7 | 6.5e-16 | 124 | 170 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR+riN+++ L+ l+P++ K +Ka++L +A+eY+k+Lq Migut.C00561.1.p 124 VHNLSEKRRRSRINEKLKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 170 6*************************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 6.59E-19 | 116 | 174 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.2E-20 | 117 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-20 | 117 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.898 | 120 | 169 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-13 | 124 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.6E-18 | 126 | 175 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MVSDPAVVII NEMSDLYGSN ESEEDISSFL QILLQNPSSS APPTTAPPAA GEFFIAGEAV 60 PVPEPSSGID ISDPSCFFGR DYDGLNPSSS VKNLASSSEE PEGSDAPGNP SLPHSSKRRR 120 AAEVHNLSEK RRRSRINEKL KALQNLIPNS NKTDKASMLD EAIEYLKQLQ LQVQMLTMRN 180 GLSLHPGYSL GSLQSMLAPS SDGLELNEQN NALLNANRGA GPLTSDQDFF IQHNNNNLEP 240 TNQSSSNNQP MLVPSTSNTP PSLVPHLMQN HYGLLNHFAS GKDICRDDNT LSRLQLDRSY 300 NSGNNSSPGV SS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 117 | 132 | RRRAAEVHNLSEKRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.C00561.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012851608.1 | 0.0 | PREDICTED: transcription factor SPATULA-like | ||||
TrEMBL | A0A022QBY7 | 0.0 | A0A022QBY7_ERYGU; Uncharacterized protein | ||||
STRING | Migut.C00561.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7543 | 23 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36930.1 | 1e-36 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.C00561.1.p |