PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.C00517.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 300aa MW: 34109.6 Da PI: 4.9843 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.5 | 6.2e-27 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k+ien++nrqvtfskRrng++KKA+ELSvLCd++va+++fs++g++ +s Migut.C00517.1.p 9 KKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALLMFSPSGRVSIFS 58 68*******************************************98776 PP | |||||||
2 | K-box | 17.9 | 1.3e-07 | 99 | 160 | 5 | 66 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiR 66 s s +++ e++qqel k k +ie +++ +R + G+ e ++ e eq Le+ lk+iR Migut.C00517.1.p 99 SPASMIDSQVEEMQQELHKCKCQIEDMEKRLRIYEGDPSEITTFCEADYREQVLEENLKQIR 160 444477899****************************9999999999999999999999999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.31 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.7E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.14E-30 | 2 | 79 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.70E-37 | 2 | 75 | No hit | No description |
PRINTS | PR00404 | 5.4E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.7E-25 | 10 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.4E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.4E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0080092 | Biological Process | regulation of pollen tube growth | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MGRVKLQIKK IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALLMFSP SGRVSIFSGN 60 SSIEEIMARY VNLPEHERGR ALGKLKSEAN PTYQAATSSP ASMIDSQVEE MQQELHKCKC 120 QIEDMEKRLR IYEGDPSEIT TFCEADYREQ VLEENLKQIR VMNLATESRD INVLGTSNQD 180 SLLDWLPQRD PQVQILNFLD SNGLLPMRDQ NQRMDNMMPS SLTLVHAPTM HVYNHLSPAR 240 SMEDDAQRPE FGQAIDVNLS PWAELYPTGN DPFPTSQPRE RALLELFLSQ LTPVNQDHI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 8e-17 | 1 | 77 | 1 | 77 | MEF2 CHIMERA |
6byy_B | 8e-17 | 1 | 77 | 1 | 77 | MEF2 CHIMERA |
6byy_C | 8e-17 | 1 | 77 | 1 | 77 | MEF2 CHIMERA |
6byy_D | 8e-17 | 1 | 77 | 1 | 77 | MEF2 CHIMERA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.C00517.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU332288 | 1e-39 | GU332288.1 Coffea arabica MADS-box protein Md subfamily (C13) mRNA, complete cds. | |||
GenBank | KJ483231 | 1e-39 | KJ483231.1 Coffea arabica Md (Md) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011069761.1 | 0.0 | agamous-like MADS-box protein AGL104 isoform X1 | ||||
TrEMBL | A0A2G9HCX4 | 0.0 | A0A2G9HCX4_9LAMI; MADS box transcription factor |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6183 | 19 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 1e-47 | AGAMOUS-like 104 |
Link Out ? help Back to Top | |
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Phytozome | Migut.C00517.1.p |