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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.B01849.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MYB_related | ||||||||
Protein Properties | Length: 85aa MW: 9852.12 Da PI: 8.2329 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.5 | 1.8e-09 | 28 | 68 | 4 | 46 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++++E++++ + +k+ G + W++Ia +++ gRt+ ++ +w + Migut.B01849.1.p 28 MSEQEQDIIFRMHKLVGDK-WELIAGRIP-GRTAQEIERFWIN 68 799**************99.*********.***********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 2.6E-6 | 24 | 72 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.27E-7 | 27 | 68 | No hit | No description |
Pfam | PF00249 | 1.7E-8 | 28 | 68 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 5.993 | 29 | 66 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-12 | 29 | 68 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.28E-8 | 29 | 69 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 85 aa Download sequence Send to blast |
MDNNNKTMVQ TFSSSQEDRS NGCELTSMSE QEQDIIFRMH KLVGDKWELI AGRIPGRTAQ 60 EIERFWINCD TFKVNRVPQT TRKK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MYB-type transcription factor involved in trichome cell specification. Acts as a negative regulator of trichome patterning and formation by direct binding to the cis-acting regulatory elements of GL1, thus suppressing the expression of GL1. {ECO:0000269|PubMed:17933793}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.B01849.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012844007.1 | 1e-57 | PREDICTED: MYB-like transcription factor ETC3 | ||||
Swissprot | D3GKW6 | 4e-20 | TCL1_ARATH; MYB-like transcription factor TCL1 | ||||
TrEMBL | A0A2G9I9T4 | 1e-21 | A0A2G9I9T4_9LAMI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11707 | 18 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01060.2 | 1e-23 | CAPRICE-like MYB3 |
Link Out ? help Back to Top | |
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Phytozome | Migut.B01849.1.p |
Publications ? help Back to Top | |||
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