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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.B01641.1.p | ||||||||
Common Name | LOC105964024, MIMGU_mgv1a024257mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | LBD | ||||||||
Protein Properties | Length: 210aa MW: 22638.8 Da PI: 6.1039 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.1 | 8.2e-40 | 20 | 120 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+lrrkC+++Cv+apyf +eq +++fa+vh++FGasn +kll ++p+++r da+ +l+yeA ar+rdPvyG+vg+i++lqqq+ +l+a Migut.B01641.1.p 20 PCGACKFLRRKCVRGCVFAPYFDSEQgTAHFAAVHRVFGASNASKLLLRIPPHRRLDAVITLCYEALARVRDPVYGCVGHIFTLQQQIVNLQA 112 7***********************9989***************************************************************** PP DUF260 93 elallkee 100 ela+++++ Migut.B01641.1.p 113 ELAYTQAR 120 ***99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.716 | 19 | 121 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-38 | 20 | 118 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MSNCGGGDGG ESGGGGGGGP CGACKFLRRK CVRGCVFAPY FDSEQGTAHF AAVHRVFGAS 60 NASKLLLRIP PHRRLDAVIT LCYEALARVR DPVYGCVGHI FTLQQQIVNL QAELAYTQAR 120 ISTFRRGPCL PPVPQPIAPS RPSSEFACEM AVFDADETSV EMTSFCNNNN IVVDEEEVVV 180 LEDGELQSLA MEYVSRYFPG VRFRPPTSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-39 | 16 | 114 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-39 | 16 | 114 | 7 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00313 | DAP | Transfer from AT2G45410 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.B01641.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012843975.1 | 1e-153 | PREDICTED: LOB domain-containing protein 19 | ||||
Swissprot | O22132 | 4e-65 | LBD19_ARATH; LOB domain-containing protein 19 | ||||
TrEMBL | A0A022QVV5 | 1e-152 | A0A022QVV5_ERYGU; Uncharacterized protein | ||||
STRING | Migut.B01641.1.p | 1e-152 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45410.1 | 2e-64 | LOB domain-containing protein 19 |
Link Out ? help Back to Top | |
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Phytozome | Migut.B01641.1.p |
Entrez Gene | 105964024 |