PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

HD-ZIP

Protein Properties

Length: 307aa MW: 33944.9 Da PI: 7.3733

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.B01552.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.3	1.3e-18	143	197	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq +Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k Migut.B01552.1.p 143 RKKLRLSKEQAAVLEETFKEHNTLNPKQKMALAKQLNLRARQVEVWFQNRRARTK 197 788899***********************************************98 PP
2	HD-ZIP_I/II	125.1	3.2e-40	143	232	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlskeq+++LEe+F+e+++L+p++K++la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+L+r++++l++en+rL+kev+eLr +l Migut.B01552.1.p 143 RKKLRLSKEQAAVLEETFKEHNTLNPKQKMALAKQLNLRARQVEVWFQNRRARTKLKQTEVDCEYLRRCCENLTDENRRLQKEVTELR-AL 232 69*************************************************************************************9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04618	2.6E-26	1	121	IPR006712	HD-ZIP protein, N-terminal
Gene3D	G3DSA:1.10.10.60	1.4E-18	116	200	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.78E-18	134	200	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.184	139	199	IPR001356	Homeobox domain
SMART	SM00389	1.0E-14	141	203	IPR001356	Homeobox domain
Pfam	PF00046	4.6E-16	143	197	IPR001356	Homeobox domain
CDD	cd00086	1.46E-14	143	200	No hit	No description
PROSITE pattern	PS00027	0	174	197	IPR017970	Homeobox, conserved site
SMART	SM00340	4.6E-26	199	242	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	9.5E-11	199	233	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MAEKDDGLGL SLSLGCPDNN QIQNHHPSPA ATPPPPPTAA TRFPLNFFRS PLPFMQQHVS 60 SSSDAFHPSS TDRNAEARSS LFRGIDMNIR AVSVIDCDEE VMVSSPNSTV SSLSGKRSER 120 EDNDGESLDL DDDGGDGGDA AARKKLRLSK EQAAVLEETF KEHNTLNPKQ KMALAKQLNL 180 RARQVEVWFQ NRRARTKLKQ TEVDCEYLRR CCENLTDENR RLQKEVTELR ALKLSPQFYM 240 NMSPPTTLTM CPQCERVAVS SSSSSAASAS LDRPTTNGST HHHHHRPVPM NSWAAVIPPH 300 HHRTGS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	191	199	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.B01552.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012843531.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT4-like
Swissprot	P46602	2e-87	HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBL	A0A2G9HT48	1e-147	A0A2G9HT48_9LAMI; Transcription factor HEX

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1118	24	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16780.1	3e-76	homeobox protein 2

Link Out ? help Back to Top
Phytozome	Migut.B01552.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zou LJ, et al. Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus. Plant Cell Physiol., 2016. 57(9): p. 1879-89 [PMID:27328697] Caggiano MP, et al. Cell type boundaries organize plant development. Elife, 2018. [PMID:28895530]