PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.B01294.1.p
Common NameLOC105969513, MIMGU_mgv1a002486mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C3H
Protein Properties Length: 669aa    MW: 73315.9 Da    PI: 6.7085
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.B01294.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.42.2e-07292312526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       +C++f++ G C++Gd C +aHg
  Migut.B01294.1.p 292 PCPDFRK-GACRRGDMCEYAHG 312
                       8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.203.8E-1826153IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484038.08E-1828151IPR020683Ankyrin repeat-containing domain
PfamPF127961.0E-1135142IPR020683Ankyrin repeat-containing domain
CDDcd002043.11E-1471151No hitNo description
PROSITE profilePS5029715.88473149IPR020683Ankyrin repeat-containing domain
SMARTSM002480.2473103IPR002110Ankyrin repeat
PRINTSPR014152.1E-57489IPR002110Ankyrin repeat
PROSITE profilePS5008812.129108143IPR002110Ankyrin repeat
SMARTSM002485.6E-5108140IPR002110Ankyrin repeat
PRINTSPR014152.1E-5127141IPR002110Ankyrin repeat
SMARTSM003564.0E-6287313IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582292314IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-4292314IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-5292312IPR000571Zinc finger, CCCH-type
SMARTSM0035645322345IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MCSGPEQTNS ESSTKDMNKL HVDTDDSFSN LLEFAANNDV ESFKRFIELD LSAVDEAGLW  60
YVRKRDSKQI THEERTPLMI AATYGSVDIL KLIVALPEVD LNRSCGQDKW TALHCAAFGG  120
SVNSFDVVKL LLSAGANPNV EDANGRRPVD VITSPPKVLG AKAAIEDLLM NNISDGSVGI  180
CNLRVSISSS DASSPVLSSS SPESRSPCSQ SDSVSSPKPP NGLSEKKQYP VDPSLPDIRN  240
SIYSTDEFRM FSFKVRPCSR AYSHDWTECP FVHPGENARR RDPRKFHYSC VPCPDFRKGA  300
CRRGDMCEYA HGVFECWLHP AQYRTRLCKD GTSCARQVCF FAHRPEEVRP LYVSTGSGVP  360
SPRSAASAAT FMDMAAALNF LPGSPTSQSV MSPSFNQTMS PNGNGMSSHS SPAWPQPNVP  420
TLHLPGSNLQ SSRLRSSFSA RDIPPENLNA MLTPSNLDEL FSAEMASSPR FSDQTATFGV  480
FSPSHKSAVF NQFQQQQQQT MLSPINTNVF SPRNIEHNPL LQASLGVSSP RMSPRNMDPA  540
SPMNAHLSAL AQRERHQQQL RSLSSRDLGG PHRGAAWSKW GSPNGKADWS IGGESQNRMK  600
RSNSFELKNG GEEPDLSWVQ SLVKESPPET TNKPNSGEFV NSNSEIDSMD QSVLGAWLEQ  660
MRLDQLVV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.B01294.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012849729.10.0PREDICTED: zinc finger CCCH domain-containing protein 30
RefseqXP_012849730.10.0PREDICTED: zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A022QII30.0A0A022QII3_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]