![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.B01188.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 469aa MW: 52865.3 Da PI: 4.9315 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.5 | 4.2e-12 | 171 | 213 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +ErrRR+++N+++ Lr+l+P+ + Kl+ a+iL A++Y+++L Migut.B01188.1.p 171 RAERRRRKKLNDRLYSLRSLVPNiS------KLDRASILGDAIDYVNEL 213 58*********************66......***************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.177 | 164 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.77E-12 | 166 | 218 | No hit | No description |
SuperFamily | SSF47459 | 4.45E-16 | 166 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.2E-15 | 170 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-9 | 171 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-15 | 172 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048657 | Biological Process | anther wall tapetum cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000978 | Molecular Function | RNA polymerase II core promoter proximal region sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 469 aa Download sequence Send to blast |
MEEQTITNNN NNINNNNNNS GTTDSFSSDL HPNNNNINNN NNIFQHQIMT SSSDFPKVDN 60 QIDCMDNNLP QDISIDRIHL STNPSLQHQQ FVVNSENGNG GIFLEGADFT PSIENNNNNN 120 NNELDPTQMN EDSSNFRCEN NRSDESDPND DEFDAKYRRR TGKGPQSKNL RAERRRRKKL 180 NDRLYSLRSL VPNISKLDRA SILGDAIDYV NELKKQAEDL QIELEERSDE EKTTGKDETD 240 QNNVVVTQNG VTKRGPNKRG QGNFPNGFHS NNSIKASKQN YREQLDDAND KVQQMEPQVE 300 VFELDGNEFY VKVFCEHKSG GFVRLMEALN SLGLEVTNVN TTRHTCLVSS IFKVEQKNNE 360 SVEADHVKES LLELTRNPSR NIMWGIRPTS ININDQSDED GLMINNNDNI NININIDNDY 420 CVHHDQGGGG HHNHHHHSLL HGGGGGGRQI NSHGPPPTLT TIECSYFI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 7e-14 | 162 | 226 | 2 | 73 | Transcription factor MYC2 |
5gnj_B | 7e-14 | 162 | 226 | 2 | 73 | Transcription factor MYC2 |
5gnj_E | 7e-14 | 162 | 226 | 2 | 73 | Transcription factor MYC2 |
5gnj_F | 7e-14 | 162 | 226 | 2 | 73 | Transcription factor MYC2 |
5gnj_G | 7e-14 | 162 | 226 | 2 | 73 | Transcription factor MYC2 |
5gnj_I | 7e-14 | 162 | 226 | 2 | 73 | Transcription factor MYC2 |
5gnj_M | 7e-14 | 162 | 226 | 2 | 73 | Transcription factor MYC2 |
5gnj_N | 7e-14 | 162 | 226 | 2 | 73 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 157 | 178 | RRRTGKGPQSKNLRAERRRRKK |
2 | 172 | 179 | ERRRRKKL |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Plays a crucial role in tapetum development. Required for male fertility and pollen differentiation, especially during the post-meiotic transcriptional regulation of microspore development within the developing anther (PubMed:12535353). Binds E-box regions in the AHL16/TEK promoter. {ECO:0000269|PubMed:12535353, ECO:0000269|PubMed:24804694}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.B01188.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012849922.1 | 0.0 | PREDICTED: transcription factor ABORTED MICROSPORES | ||||
Swissprot | Q9ZVX2 | 5e-72 | AMS_ARATH; Transcription factor ABORTED MICROSPORES | ||||
TrEMBL | A0A022QKD1 | 0.0 | A0A022QKD1_ERYGU; Uncharacterized protein | ||||
STRING | Migut.B01188.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9672 | 22 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G16910.1 | 1e-71 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.B01188.1.p |