PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.B01089.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 263aa MW: 29713 Da PI: 4.5964 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 41.4 | 1.8e-13 | 10 | 47 | 2 | 39 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevavii 39 +i n+s+r+ f kR + +lKKA+ELS+LC++e +i+ Migut.B01089.1.p 10 QIANESKRNAVFRKRVESLLKKANELSILCGIEMGIIV 47 799*******************************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.8E-10 | 1 | 65 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 16.189 | 1 | 47 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.35E-17 | 2 | 97 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 6.77E-19 | 2 | 89 | No hit | No description |
PRINTS | PR00404 | 5.6E-8 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.2E-13 | 11 | 48 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.6E-8 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.6E-8 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MTRKKIKHEQ IANESKRNAV FRKRVESLLK KANELSILCG IEMGIIVKRG EDNNPNNANP 60 IFWPSPEVFT ERLHKFTNFS NFEISKKMVT KEKYMEQALN AEKAILSKSK KIIEVKESQE 120 SIKEAMKGMC IDEIDTSHLN ELNLFVDEML TKLGDTTDDN NNNNNNNNNN NNNNNNNNNN 180 NINININNIN INNNINDNEQ EPMDLLENMK NDGWFIDTMA ERQEEEVVAG FFEVPWNNII 240 GGGDDETAGT SSAASPANGG FQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.B01089.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012855105.1 | 1e-148 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A022Q211 | 1e-101 | A0A022Q211_ERYGU; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA378 | 20 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.2 | 3e-16 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.B01089.1.p |