PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.B01081.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | Trihelix | ||||||||
Protein Properties | Length: 164aa MW: 18958.9 Da PI: 4.7066 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 49.4 | 1.2e-15 | 24 | 66 | 44 | 87 |
trihelix 44 erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 ++s+ Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a Migut.B01081.1.p 24 QKSARCCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 66 7899***********************8.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 7.7E-10 | 23 | 67 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MHDLLHRTKR QNSTPQCPHL LTHQKSARCC KEKWENINKY FKKVKESNKK RPEDSKTCPY 60 FHQLDAIYRE RGSKSDVVSF PGYGLNPDDN NPMMLPPPIM ARPEQQWPLP PDEQRQPPDQ 120 FQDNESDQDD VDGDEDDEED EAQCFEIVIN KQQSSVTTTN AAD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.B01081.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 1e-34 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012853467.1 | 3e-75 | PREDICTED: LOW QUALITY PROTEIN: trihelix transcription factor GT-2-like | ||||
Swissprot | Q39117 | 1e-23 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | A0A022RYW7 | 6e-94 | A0A022RYW7_ERYGU; Uncharacterized protein | ||||
STRING | Migut.B01081.1.p | 1e-119 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2402 | 24 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 8e-26 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.B01081.1.p |