 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Migut.B01075.1.p |
| Common Name | LOC105974565, MIMGU_mgv1a004059mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
| Family |
Trihelix |
| Protein Properties |
Length: 547aa MW: 62245.5 Da PI: 6.8324 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Migut.B01075.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 38.6 | 2.8e-12 | 117 | 178 | 2 | 68 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68
W+++evlaL+++r+ me ++ + W ++s+k++e gf+rs++qCk+++++ k ++ +
Migut.B01075.1.p 117 WSDEEVLALLRLRSTMEIWFPDF-----TWLHISRKLSELGFKRSAEQCKDRFDQETKHLNTSTNVN 178
********************998.....9************************99888766666555 PP
|
| 2 | trihelix | 88.5 | 7.6e-28 | 422 | 520 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk..............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79
rW+++evlaLi++r ++ ++++++ + plWe++s+ m e g++r++k+Ckekwen+nk+++k+k+++kkr s +s+tc
Migut.B01075.1.p 422 RWPRDEVLALINLRCKLSGSSSSSNsnedvehgemvsaaKGIPLWERISQGMTELGYKRNAKRCKEKWENINKYFRKTKDSNKKR-SINSRTC 513
8**************998888877566777778888876889******************************************8.78888** PP
trihelix 80 pyfdqle 86
pyf+ql+
Migut.B01075.1.p 514 PYFQQLT 520
*****97 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0001158 | Molecular Function | enhancer sequence-specific DNA binding |
| GO:0005516 | Molecular Function | calmodulin binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 547 aa
Download sequence Send
to blast |
MFDGVSSSSS EQFHQFMAAR TTSSSSSLIA NNYPLMSSFS NLHHHHQENP SSNFSAGFDN 60
TYSSSSPSLV LHHHHNHHHH QESSPPNNNT TTKEDTDIDV DVDVDVKHVV IGSIDPWSDE 120
EVLALLRLRS TMEIWFPDFT WLHISRKLSE LGFKRSAEQC KDRFDQETKH LNTSTNVNFN 180
KNNYRNILMS ELDEFYPPAD QEQPPVSPPK QIDQKLLYKN VNVELESEAN LAPNPSQESE 240
DAVIMTTTTK KPINKRRKKK RKDKFEIFKG FCQAVVNKMM AQQEDLHNKL IDDIVKRDKE 300
TIARDEARKN EEMERLKREM DVRAKEQAIA RERQAALIEF LKKFTSQEDE DENIVNNEAF 360
NSFVTSSVLC PDKETAAAAS STTTTTATTT TILTELPRQI YKTPSPVNIV HEERGGGDLG 420
KRWPRDEVLA LINLRCKLSG SSSSSNSNED VEHGEMVSAA KGIPLWERIS QGMTELGYKR 480
NAKRCKEKWE NINKYFRKTK DSNKKRSINS RTCPYFQQLT SLYSQPGTVL LVGPPTNNII 540
NNVPEN*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 249 | 259 | KKPINKRRKKK |
| 2 | 249 | 261 | KKPINKRRKKKRK |
| 3 | 254 | 262 | KRRKKKRKD |
| 4 | 255 | 260 | RRKKKR |
| 5 | 255 | 261 | RRKKKRK |
| 6 | 255 | 262 | RRKKKRKD |
| 7 | 256 | 262 | RKKKRKD |
| 8 | 256 | 263 | RKKKRKDK |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
