PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.B00956.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | NF-YB | ||||||||
Protein Properties | Length: 200aa MW: 21820.6 Da PI: 4.692 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 138.9 | 1.4e-43 | 54 | 146 | 2 | 94 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 re+d ++P++n++r++++vlP +akis+dake++qecvsefis vtsea++k++re rkti ++dl+ a+++lGf+dyve l+vyl kyr + Migut.B00956.1.p 54 RETDLYMPMTNIVRVLRRVLPPHAKISDDAKEIIQECVSEFISIVTSEANEKAHREYRKTIHPEDLIAAMSSLGFDDYVEHLTVYLDKYRAED 146 799***************************************************************************************866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.4E-40 | 51 | 149 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.33E-32 | 57 | 149 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.7E-20 | 60 | 123 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.8E-15 | 87 | 105 | No hit | No description |
PRINTS | PR00615 | 1.8E-15 | 106 | 124 | No hit | No description |
PRINTS | PR00615 | 1.8E-15 | 125 | 143 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MEIGGNSNTQ HKDTTRASTS ASVKSTINPE SVAPNLPTSN VGDRNQAPPQ DFRRETDLYM 60 PMTNIVRVLR RVLPPHAKIS DDAKEIIQEC VSEFISIVTS EANEKAHREY RKTIHPEDLI 120 AAMSSLGFDD YVEHLTVYLD KYRAEDPERG ASMQIQLPMV VRSGAQQPSA APVAPPVPPP 180 PPAPLVVMGD GPVIVDDEE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 4e-40 | 54 | 143 | 7 | 96 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.B00956.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012858186.1 | 1e-109 | PREDICTED: nuclear transcription factor Y subunit B-9-like | ||||
TrEMBL | A0A022RVS1 | 1e-104 | A0A022RVS1_ERYGU; Uncharacterized protein | ||||
STRING | Migut.B00956.1.p | 1e-144 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6044 | 4 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21970.1 | 6e-44 | NF-YB family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.B00956.1.p |