PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.B00953.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | NF-YB | ||||||||
Protein Properties | Length: 219aa MW: 23890.8 Da PI: 4.3645 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 134.3 | 3.7e-42 | 52 | 144 | 2 | 94 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 re+d ++P++n++r+++++lP +akis+dake++qe vsefis vtsea++k++re rkti ++d++ a+++lGf+dyvepl+vyl+kyr + Migut.B00953.1.p 52 RETDLYMPMTNIVRVLRRALPPHAKISDDAKEIIQERVSEFISIVTSEANEKAHREYRKTIHPEDVIAAMSSLGFDDYVEPLTVYLNKYRAED 144 799***************************************************************************************865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.9E-40 | 49 | 147 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.93E-31 | 55 | 147 | IPR009072 | Histone-fold |
Pfam | PF00808 | 6.1E-19 | 58 | 121 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 2.1E-15 | 85 | 103 | No hit | No description |
PRINTS | PR00615 | 2.1E-15 | 104 | 122 | No hit | No description |
PRINTS | PR00615 | 2.1E-15 | 123 | 141 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MEIGGNSNTQ HKDTTRASAS ASGTIDPNSV APNLPTSNVG DQNQAPPQDF RRETDLYMPM 60 TNIVRVLRRA LPPHAKISDD AKEIIQERVS EFISIVTSEA NEKAHREYRK TIHPEDVIAA 120 MSSLGFDDYV EPLTVYLNKY RAEDPERGAS MQIQLPMAIP SGAQQPPAAV VAPPVPPPPP 180 APLVVMGDGM VIVDDDEVVG PDEYIGFDEV IRKYFLND* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 6e-40 | 52 | 141 | 7 | 96 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.B00953.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012858186.1 | 1e-158 | PREDICTED: nuclear transcription factor Y subunit B-9-like | ||||
TrEMBL | A0A022RVS1 | 1e-113 | A0A022RVS1_ERYGU; Uncharacterized protein | ||||
STRING | Migut.B00953.1.p | 1e-157 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21970.1 | 2e-43 | NF-YB family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.B00953.1.p |