PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.B00923.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | NF-YB | ||||||||
Protein Properties | Length: 211aa MW: 23080.1 Da PI: 4.175 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 110.3 | 1.1e-34 | 49 | 141 | 3 | 96 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 + +++Pi n++ri++++lP +aki++da e++qec+sefi+ vtsea++k++ + r i+ +d++ a+++lG++dyvepl+v+l+kyr ++ Migut.B00923.1.p 49 DAYQYMPIVNIVRILRRALP-HAKIADDANEIIQECISEFIAIVTSEANEKARSQYRTIITLEDVIAAIGSLGLDDYVEPLTVFLNKYRAADP 140 66789***************.69******************************************************************9876 PP NF-YB 96 e 96 e Migut.B00923.1.p 141 E 141 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.8E-31 | 51 | 143 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.8E-14 | 53 | 116 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 5.12E-26 | 53 | 142 | IPR009072 | Histone-fold |
PRINTS | PR00615 | 2.1E-10 | 80 | 98 | No hit | No description |
PRINTS | PR00615 | 2.1E-10 | 99 | 117 | No hit | No description |
PRINTS | PR00615 | 2.1E-10 | 118 | 136 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MLLNIYIYNS FISGTINQEA ADRAGAAANL PTTNAGDQNL ASPQSWRRDA YQYMPIVNIV 60 RILRRALPHA KIADDANEII QECISEFIAI VTSEANEKAR SQYRTIITLE DVIAAIGSLG 120 LDDYVEPLTV FLNKYRAADP ERGTSMQVQL AMAMCSTGQQ PSTTPVAQLV PPPPPTPSVI 180 TGDGPMIVDD NEEVDPDEYI GFTEVIRKYF * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 3e-32 | 48 | 136 | 7 | 96 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.B00923.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012857928.1 | 1e-144 | PREDICTED: nuclear transcription factor Y subunit B-9-like | ||||
TrEMBL | A0A022RJH1 | 9e-69 | A0A022RJH1_ERYGU; Uncharacterized protein (Fragment) | ||||
STRING | Migut.B00923.1.p | 1e-153 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21970.1 | 1e-37 | NF-YB family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.B00923.1.p |