![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.B00900.1.p | ||||||||
Common Name | MIMGU_mgv1a018962mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 248aa MW: 26163.8 Da PI: 10.0102 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.1 | 0.00014 | 180 | 202 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k+F++ L H r+H Migut.B00900.1.p 180 HECEICHKTFTSGQALGGHKRKH 202 78*******************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.74E-6 | 176 | 204 | No hit | No description |
Pfam | PF13912 | 4.2E-11 | 180 | 204 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.827 | 180 | 202 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 182 | 202 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 248 aa Download sequence Send to blast |
MALDRSLNCS AVVGSWKKSS RRSKRWCQLK LGADEILAAQ GLVMLARSGG GPYPSPPAAN 60 HLITGEAKHG GNKPAISAAA SLDFKISQEW VPTTPCPPPA VPKSYRSCAD SGKGFNSYQA 120 LDRNPDAVIP AIPAAAIERN PYAVIPAAAI ERNPYAVIPA VAAASTRCTS GMNRSGNKLH 180 ECEICHKTFT SGQALGGHKR KHYEGVIGAG SKKSRKTSSN GGAATQKMIR DFDLNLPPPP 240 DDQDFKF* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.B00900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012827263.1 | 0.0 | PREDICTED: zinc finger protein 1-like | ||||
Refseq | XP_012858992.1 | 0.0 | PREDICTED: zinc finger protein 1-like | ||||
Refseq | XP_012859027.1 | 0.0 | PREDICTED: zinc finger protein 1-like | ||||
TrEMBL | A0A022PV09 | 1e-180 | A0A022PV09_ERYGU; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15005 | 2 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G19580.2 | 1e-09 | zinc-finger protein 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.B00900.1.p |