PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Migut.B00898.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

C2H2

Protein Properties

Length: 192aa MW: 20384 Da PI: 10.077

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.B00898.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00034	118	140	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F++ L H r+H Migut.B00898.1.p 118 HECETCHKTFTSGQALGGHKRKH 140 78*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.58E-6	61	82	No hit	No description
Pfam	PF13912	7.9E-6	62	81	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.58E-6	113	140	No hit	No description
PROSITE profile	PS50157	9.93	118	140	IPR007087	Zinc finger, C2H2
Pfam	PF13912	7.3E-11	118	142	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	120	140	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
QQRRHRRTGG GPYPSPPAKP AVPETTIPAA ASLDYSDVKI SQESVPTTPS PPPPVAKSYR 60 SCVDCGKGFN SYQVLGGHKA TCRLKPTTVA AIDRNPYTVI PAVAAKYNSG TNPSGKLHEC 120 ETCHKTFTSG QALGGHKRKH YEGVIGGGSK KSRSTSSNGG AASQKMIRDF DLNLPPPPDQ 180 DHSFRILYIS L*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.B00898.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012858993.1	4e-84	PREDICTED: zinc finger protein 1-like
TrEMBL	A0A022PX17	1e-92	A0A022PX17_ERYGU; Uncharacterized protein (Fragment)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15005	2	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19580.2	1e-20	zinc-finger protein 2

Link Out ? help Back to Top
Phytozome	Migut.B00898.1.p