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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.B00859.1.p | ||||||||
Common Name | LOC105978148, MIMGU_mgv1a015650mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | C3H | ||||||||
Protein Properties | Length: 152aa MW: 16680.7 Da PI: 9.2586 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.2 | 9.1e-11 | 63 | 84 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f rtG C+yGd+Ck++H+ Migut.B00859.1.p 63 VCNRFVRTGSCQYGDSCKYHHP 84 6********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.7E-14 | 4 | 47 | No hit | No description |
Pfam | PF06220 | 5.7E-9 | 5 | 38 | IPR013085 | Zinc finger, U1-C type |
PROSITE profile | PS50103 | 13.235 | 58 | 86 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-7 | 60 | 88 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0019 | 60 | 85 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-8 | 63 | 84 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-6 | 63 | 84 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MPLGKYVCDY CDKQFQDTPG ARRRHLQGVA HQRAKALWYD SFRSSTQPGL NQVQDPLSIG 60 KGVCNRFVRT GSCQYGDSCK YHHPNKNLPN MTSSQGTEGT SFVNNIQSQR EASLPAVLSG 120 NRTGASLRNL PPSLWPPPEG GYPAIPFIDW G* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.B00859.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012859021.1 | 1e-111 | PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X1 | ||||
Swissprot | Q0JP11 | 2e-42 | C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3 | ||||
TrEMBL | A0A022PSS0 | 1e-106 | A0A022PSS0_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12008 | 18 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26749.1 | 2e-43 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.B00859.1.p |
Entrez Gene | 105978148 |
Publications ? help Back to Top | |||
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