PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

Trihelix

Protein Properties

Length: 373aa MW: 42759.1 Da PI: 9.523

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.B00650.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	63.4	5e-20	109	204	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyf 82 rWt+++v++Li++ +++ e + ++ +k++W+++s+ m erg+ +sp+qC++k+++lnk+yk++ + +++ +++++++ + Migut.B00650.1.p 109 RWTDDMVKVLIKVASYIAEIASPDCtdgetnplltPIKGKWRSISNIMVERGYIVSPQQCEDKFNDLNKKYKRLSDLLGGHaSCTVVENPLLM 201 8************999999988777778888889*****************************************99678888777666 PP trihelix 83 dql 85 +++ Migut.B00650.1.p 202 ESM 204 666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.6E-15	109	193	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MQVNHRQAPA PAPTPTPRPT RALTPYSYAN TSFNQHQFLN TLAFGAHTVQ HFHQPVMFLG 60 GKTNEGGMKN FAPKSQLKSQ PKIQHSAGRS GQSGVLSETG TEQVWQRIRW TDDMVKVLIK 120 VASYIAEIAS PDCTDGETNP LLTPIKGKWR SISNIMVERG YIVSPQQCED KFNDLNKKYK 180 RLSDLLGGHA SCTVVENPLL MESMNIPEDS KEEIRKILTC KQLFYREMYS YHNKSTRFLP 240 HDPPLQQLVR STLKGKVKYE SSQSQSLTLD MPAKRQKHGE GNCVINVVPE GIEGKKSEWV 300 VPWSVGLADK KLRMHNEMME LEKMKFEWVK VCQEEDKELE RLKLENELIK IENERLEFQI 360 MCRRQRGNAR RY*

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MQVNHRQAPA PAPTPTPRPT RALTPYSYAN TSFNQHQFLN TLAFGAHTVQ HFHQPVMFLG  60
GKTNEGGMKN FAPKSQLKSQ PKIQHSAGRS GQSGVLSETG TEQVWQRIRW TDDMVKVLIK  120
VASYIAEIAS PDCTDGETNP LLTPIKGKWR SISNIMVERG YIVSPQQCED KFNDLNKKYK  180
RLSDLLGGHA SCTVVENPLL MESMNIPEDS KEEIRKILTC KQLFYREMYS YHNKSTRFLP  240
HDPPLQQLVR STLKGKVKYE SSQSQSLTLD MPAKRQKHGE GNCVINVVPE GIEGKKSEWV  300
VPWSVGLADK KLRMHNEMME LEKMKFEWVK VCQEEDKELE RLKLENELIK IENERLEFQI  360
MCRRQRGNAR RY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.B00650.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012828285.1	0.0	PREDICTED: uncharacterized protein LOC105949530
TrEMBL	A0A022PUN5	0.0	A0A022PUN5_ERYGU; Uncharacterized protein
STRING	Migut.B00650.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12585	16	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76870.1	6e-49

Link Out ? help Back to Top
Phytozome	Migut.B00650.1.p