PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.B00482.1.p | ||||||||
Common Name | LOC105957333, MIMGU_mgv1a022990mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 242aa MW: 25525.9 Da PI: 5.8895 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 61.7 | 8.2e-20 | 26 | 73 | 1 | 48 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 k+ie+ s rqvtfskRr g++KKA+EL++L +a+va+i+ s +++ Migut.B00482.1.p 26 KKIESLSSRQVTFSKRRVGLFKKASELCILSGAQVAIIVHSLGKRVFA 73 68*************************************997766665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.6E-28 | 18 | 77 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.394 | 18 | 78 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-23 | 19 | 89 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.2E-17 | 20 | 40 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.1E-19 | 27 | 74 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.2E-17 | 40 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.2E-17 | 55 | 76 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MVIMKNNGQT TVVKKTSQGR RKIEIKKIES LSSRQVTFSK RRVGLFKKAS ELCILSGAQV 60 AIIVHSLGKR VFAFGHPTPD SVIDRFLSGG AVENCPAAAA AAWAGDYNRD YADVCKELEA 120 EKKRKEFIEA SKRAEECYGG GGGGFWWDEA VEGMGLEELE QYAAALDMLM KNVALKADDM 180 MISAAAAAAA AAGGGNAARS DGGDGYLMNE MAAAFVNQSQ GIGGSDSGGC VFPYGFGQDQ 240 I* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.B00482.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012836714.1 | 1e-177 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A022RBY5 | 1e-175 | A0A022RBY5_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2134 | 22 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 3e-35 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Migut.B00482.1.p |
Entrez Gene | 105957333 |