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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Migut.B00228.1.p |
Common Name | MIMGU_mgv1a007881mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family |
bHLH |
Protein Properties |
Length: 393aa MW: 43704.9 Da PI: 5.9428 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Migut.B00228.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 30.5 | 6.6e-10 | 228 | 275 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq
Migut.B00228.1.p 228 SHSLAERVRREKISERMKYLQDLVPGC----DKITGKAGMLDEIINYVQSLQ 275
8*************************9....899*****************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 393 aa
Download sequence Send
to blast |
MNRGGLPEML HCLHAAASEG ADISVLDRQR SRHKWQQDQL LIQQHHQQNQ PLPYFSDNSD 60 QLGGVFMSLN GDHGGLHELL LGGAMKPDPG LENGWGGDLV GGLNYASELE KNYAIQRTVS 120 CPPDVAAAKI AAQEAALSSA AGRESSKKRK ADKTQTLKVI AEEKTEEKKM KECFEEDSKI 180 TEQNSNNNNK SSTITTATNS KDNNNNSKEF PKTDYIHVRA RRGQATDSHS LAERVRREKI 240 SERMKYLQDL VPGCDKITGK AGMLDEIINY VQSLQRQVEF LSMKLAVINP RLDFDVENYH 300 TKQNFTGCSS SVPTIGTPSE MMDQSLLQFN SLGQEVSGSI LEMLVNPMDV SLRRTISAPV 360 SVPHPFLDSS SLNQQIQHVT WEDEFQNIYN ME*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that binds DNA to G box 5'-CACGTG-3' and, to a lower extent, to E-box 5'-CANNTG-3' in vitro. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light. {ECO:0000269|PubMed:18988809, ECO:0000269|PubMed:24130508}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Accumulates strongly in response to blue light due to reduced preventing 26S proteasome-mediated degradation in an ADO1/ZTL and ADO2/LKP2 dependent manner, but levels decrease in the absence of blue light via 26S proteasome degradation (at protein level). {ECO:0000269|PubMed:24101505}. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT4G34530.1 | 1e-54 | cryptochrome-interacting basic-helix-loop-helix 1 |
Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] - Yang D,Zhao W,Meng Y,Li H,Liu B
A CIB1-LIKE transcription factor GmCIL10 from soybean positively regulates plant flowering. Sci China Life Sci, 2015. 58(3): p. 261-9 [PMID:25651969] - Katsura Y, et al.
An optogenetic system for interrogating the temporal dynamics of Akt. Sci Rep, 2015. 5: p. 14589 [PMID:26423353] - Taslimi A, et al.
Optimized second-generation CRY2-CIB dimerizers and photoactivatable Cre recombinase. Nat. Chem. Biol., 2016. 12(6): p. 425-30 [PMID:27065233] - Liu Q, et al.
The Blue Light-Dependent Polyubiquitination and Degradation of Arabidopsis Cryptochrome2 Requires Multiple E3 Ubiquitin Ligases. Plant Cell Physiol., 2016. 57(10): p. 2175-2186 [PMID:27516416] - Pathak GP, et al.
Bidirectional approaches for optogenetic regulation of gene expression in mammalian cells using Arabidopsis cryptochrome 2. Nucleic Acids Res., 2017. 45(20): p. e167 [PMID:28431041] - Duan L, et al.
Understanding CRY2 interactions for optical control of intracellular signaling. Nat Commun, 2017. 8(1): p. 547 [PMID:28916751] - Quejada JR, et al.
Optimized light-inducible transcription in mammalian cells using Flavin Kelch-repeat F-box1/GIGANTEA and CRY2/CIB1. Nucleic Acids Res., 2017. 45(20): p. e172 [PMID:29040770] - Liu Y, et al.
CIB1 and CO interact to mediate CRY2-dependent regulation of flowering. EMBO Rep., 2019. [PMID:30126927]
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