PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.B00192.1.p
Common NameMIMGU_mgv1a011874mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family DBB
Protein Properties Length: 202aa    MW: 22299.9 Da    PI: 5.9352
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.B00192.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.79.9e-08442537
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                       C+ ++++ +  fC+ ++  lC +C    H+       H
  Migut.B00192.1.p  4 QCDVCGKEAAAVFCTADEAALCLSCDNRVHNAnklaskH 42
                      7***************************9*655555555 PP
2zf-B_box30.76.4e-105496238
          zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                      e + C+ ++e ++ lfC++++ llC++C   +H+       H+
  Migut.B00192.1.p 54 ESPQCDICQERQALLFCQEDRALLCRECDIPIHRAneltkkHN 96
                      6789******99*********************7666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.983147IPR000315B-box-type zinc finger
CDDcd000211.49E-6347No hitNo description
PfamPF006434.2E-6443IPR000315B-box-type zinc finger
SMARTSM003366.1E-10447IPR000315B-box-type zinc finger
SMARTSM003361.9E-1553100IPR000315B-box-type zinc finger
PROSITE profilePS501199.95453100IPR000315B-box-type zinc finger
PfamPF006431.4E-85496IPR000315B-box-type zinc finger
CDDcd000214.60E-1056100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016021Cellular Componentintegral component of membrane
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MKIQCDVCGK EAAAVFCTAD EAALCLSCDN RVHNANKLAS KHPRFSILNP QYKESPQCDI  60
CQERQALLFC QEDRALLCRE CDIPIHRANE LTKKHNRFLL TGVKLSAAAS SYQAAATSST  120
ESRSEKKNKM SAANEVNYMP SSTANCSESS SNPMGYNESN QVMSEQQSDS TSSISEYLME  180
TLPGWHVEDL LDPSTHYGFL R*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.B00192.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012837094.11e-150PREDICTED: B-box zinc finger protein 20 isoform X1
SwissprotQ9LQZ71e-65BBX21_ARATH; B-box zinc finger protein 21
TrEMBLA0A022RC641e-148A0A022RC64_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14632364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.11e-55DBB family protein
Publications ? help Back to Top
  1. Xu D, et al.
    BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60
    [PMID:27325768]
  2. Xu DB, et al.
    The G-Protein Ī² Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 inĀ Arabidopsis.
    Mol Plant, 2017. 10(9): p. 1206-1223
    [PMID:28827171]
  3. Xu D,Jiang Y,Li J,Holm M,Deng XW
    The B-Box Domain Protein BBX21 Promotes Photomorphogenesis.
    Plant Physiol., 2018. 176(3): p. 2365-2375
    [PMID:29259103]
  4. Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
    Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
    Plant Physiol., 2018. 176(4): p. 2963-2976
    [PMID:29439209]
  5. Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF
    Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum.
    Plant Physiol., 2018. 177(1): p. 369-380
    [PMID:29555784]
  6. Kang X, et al.
    HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture.
    Plant Cell Environ., 2018. 41(8): p. 1912-1925
    [PMID:29748960]