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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Migut.A00803.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family |
HSF |
Protein Properties |
Length: 316aa MW: 33799.5 Da PI: 4.7449 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Migut.A00803.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 118.2 | 4.8e-37 | 29 | 120 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94
Fl+k+y+++ed+++++lisw+e+g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv ++ weF+++ Fk+g+k+ll
Migut.A00803.1.p 29 FLTKTYQLVEDPSIDDLISWNEDGTTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDGFKRGEKSLL 112
9*****************************************************************99.........**************** PP
XXXXXXXX CS
HSF_DNA-bind 95 ekikrkks 102
++i+r+k
Migut.A00803.1.p 113 RDIQRRKI 120
*****985 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0010200 | Biological Process | response to chitin |
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 316 aa
Download sequence Send
to blast |
MSSEGTTGGG GGGGGSSGGE SHRSVPTPFL TKTYQLVEDP SIDDLISWNE DGTTFIVWRP 60 AEFARDLLPK YFKHNNFSSF VRQLNTYGFR KVVPDRWEFA NDGFKRGEKS LLRDIQRRKI 120 SAGAGAGTPL NAAVIANAQS VTVALAPAAA IQISPANSGD EQVLSSNSSP AAIAVVTAAA 180 PLRACSSTTT AEILEENERL RRENAQLSQE LSRLKSLCGN IFTMMSSYAT NQGERASPEG 240 RSAELTPEAE TTAAEEDGCA AVNEEVEEMC PRIFGVPIGV KRLKKSSDDQ IHPRGFDCKS 300 EPSDPGSSQE FDDKM*
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
2ldu_A | 1e-25 | 29 | 122 | 20 | 124 | Heat shock factor protein 1 |
5d5u_B | 9e-26 | 29 | 118 | 29 | 129 | Heat shock factor protein 1 |
5d5v_B | 9e-26 | 29 | 118 | 29 | 129 | Heat shock factor protein 1 |
5d5v_D | 9e-26 | 29 | 118 | 29 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |