PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

NF-YC

Protein Properties

Length: 118aa MW: 12735.9 Da PI: 10.3836

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.A00788.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	111.1	6.3e-35	21	103	18	99
NF-YC 18 nhelPlarikkilk.adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 h+lPlarikki+k + edvkmis eaP+++skacelf+ elt r+wl + + krrt++k d+a+av tdifdflv+ v +d Migut.A00788.1.p 21 PHSLPLARIKKIMKkSSEDVKMISGEAPIVFSKACELFVEELTKRAWLITLQGKRRTMQKDDVASAVITTDIFDFLVNLVVED 103 599********73579**********************************************************99988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.27E-26	16	96	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.2E-31	18	87	IPR009072	Histone-fold
Pfam	PF00808	1.5E-21	23	87	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence Send to blast
MRQPGAYSKL LSGGVSGKTG PHSLPLARIK KIMKKSSEDV KMISGEAPIV FSKACELFVE 60 ELTKRAWLIT LQGKRRTMQK DDVASAVITT DIFDFLVNLV VEDRNNSTAA VAANKLG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-33	22	100	16	93	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.A00788.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012846523.1	9e-82	PREDICTED: nuclear transcription factor Y subunit C-1-like
Swissprot	Q9SMP0	3e-33	NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBL	A0A022QR29	2e-80	A0A022QR29_ERYGU; Uncharacterized protein
STRING	Migut.A00788.1.p	3e-81	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12881	17	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	1e-35	nuclear factor Y, subunit C1

Link Out ? help Back to Top
Phytozome	Migut.A00788.1.p
Entrez Gene	105966511

Publications ? help Back to Top
Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]