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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.A00196.1.p | ||||||||
Common Name | MIMGU_mgv1a001410mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 839aa MW: 92664.9 Da PI: 5.8169 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.5 | 1.1e-18 | 20 | 78 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++ +++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Migut.A00196.1.p 20 KYVRYTPEQVEALERLYHDCPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 78 5679*****************************************************97 PP | |||||||
2 | START | 183.3 | 1.3e-57 | 164 | 372 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+d++ W ++++++++l+v+s+g g+++ Migut.A00196.1.p 164 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVASRACGLVGLEPT-RVAEILKDRPSWYRDCRAVDVLNVLSTGngGTIE 255 789*******************************************************.8888888888************************ PP EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS START 93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181 l +++l+a+++l+p Rdf+ +Ry+ +++g++v++++S++++q+ p+ +++vRae+lpSg+l++p+++g+s +++v+h+dl+ ++++++l Migut.A00196.1.p 256 LLYMQLYAPTTLAPaRDFWLLRYTSVMEDGSLVVCERSLNNTQNGPSmppVQNFVRAEMLPSGYLVRPCEGGGSIIHIVDHIDLEPWSVPEVL 348 *********************************************9988899***************************************** PP HHHHHHHHHHHHHHHHHHTXXXXX CS START 182 rslvksglaegaktwvatlqrqce 205 r+l++s++ ++t++a+l+++++ Migut.A00196.1.p 349 RPLYESSMLLSQRTTLAALRQLRQ 372 ********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.71E-17 | 14 | 83 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.467 | 15 | 79 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-15 | 17 | 83 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.17E-16 | 20 | 80 | No hit | No description |
Pfam | PF00046 | 3.2E-16 | 21 | 78 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-18 | 22 | 78 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 1.52E-6 | 72 | 111 | No hit | No description |
PROSITE profile | PS50848 | 27.029 | 154 | 369 | IPR002913 | START domain |
CDD | cd08875 | 6.10E-78 | 158 | 373 | No hit | No description |
SMART | SM00234 | 3.4E-43 | 163 | 373 | IPR002913 | START domain |
SuperFamily | SSF55961 | 4.94E-37 | 163 | 358 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 3.8E-23 | 163 | 369 | IPR023393 | START-like domain |
Pfam | PF01852 | 3.4E-55 | 164 | 372 | IPR002913 | START domain |
Pfam | PF08670 | 8.0E-51 | 695 | 837 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010067 | Biological Process | procambium histogenesis | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0045597 | Biological Process | positive regulation of cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 839 aa Download sequence Send to blast |
MMAVTSSCKD SSKMGLDNGK YVRYTPEQVE ALERLYHDCP KPSSLRRQQL IRECPILSNI 60 EPKQIKVWFQ NRRCREKQRK EASRLQAVNR KLSAMNKLLM EENDRLQKQV SHLVYENSYF 120 RQQTQNTTLA STDNSCESVV TSGQHHLTPQ NPPRDASPAG LLSIAEETLT EFLSKATGTA 180 VEWVQMPGMK PGPDSIGIIA ISHGCTGVAS RACGLVGLEP TRVAEILKDR PSWYRDCRAV 240 DVLNVLSTGN GGTIELLYMQ LYAPTTLAPA RDFWLLRYTS VMEDGSLVVC ERSLNNTQNG 300 PSMPPVQNFV RAEMLPSGYL VRPCEGGGSI IHIVDHIDLE PWSVPEVLRP LYESSMLLSQ 360 RTTLAALRQL RQISLEITQP NVTGWGRRPA ALRALGQRLS RGFNEAVNGF ADEGWSMIES 420 DGIDDVTVHV NTSPGKLMGT IQTYANGFPS MSNAVLCAKA SMLLKNVPPA ILLRFLREHR 480 SEWADSGVDA YAAAAVKAGP SSLPVSRGGC FGGQVILPLS QTIENEEFME VIRLENMAQY 540 RDDVIMPSDI FLLQVCNGVD ENAMGTCAEL IFAPIDASFS DDAPLLPSGF RIIPLDSKSD 600 ASSPNRTLDL ASTLEVGPNN KQCGDRNNGS VKSVMTIAFQ FAFEIHLQES VAVMARQYVR 660 SIISSVQRVA LALSPSPIGS HVSLRPQHSA PEGQTLARWI CQSYRFFLGV DLLKTVAEES 720 DSLLKTLWQH SDAVLCCSLK ELPVFTFANQ AGLDMLETTL IALQDITLEK IFNDNGRKTL 780 FAELPQIMQQ GFGYLEGGVC MSSMGRPISY ERAVAWKVMN EDEDVHCLCF MFSNWSFV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.A00196.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012857948.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-8 | ||||
Swissprot | Q39123 | 0.0 | ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8 | ||||
TrEMBL | A0A022Q1L0 | 0.0 | A0A022Q1L0_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA457 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32880.1 | 0.0 | homeobox gene 8 |
Link Out ? help Back to Top | |
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Phytozome | Migut.A00196.1.p |