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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.A00165.1.p | ||||||||
Common Name | LOC105977151, MIMGU_mgv1a008351mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | C3H | ||||||||
Protein Properties | Length: 376aa MW: 41896 Da PI: 7.3741 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.5 | 9.6e-08 | 136 | 157 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C++f++ G C +Gd+C +aHg Migut.A00165.1.p 136 SACPDFRK-GACVRGDTCEYAHG 157 67******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.5E-4 | 132 | 158 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.371 | 133 | 159 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-5 | 136 | 159 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-5 | 136 | 157 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 29 | 167 | 190 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006979 | Biological Process | response to oxidative stress | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MMMIGDPHRS NPTVQIPYWD YQRTEDPTAH IHSPITHNVS TNSPDGYHHY EKALAALQRY 60 LPSNQDDDVV VQADDEDSDN FDFPVDAFSC DNFRMFEFKV KKCARARSHD WTECPFAHPG 120 EKARRRDPRK YHYSGSACPD FRKGACVRGD TCEYAHGVFE CWLHPARYRT QPCKDGTHCR 180 RHVCFFAHTP DQLRVLPYNS SPDASPARTG HDPFILVGSS PKSTLYSPPS SPTTASPPVS 240 PGGSLRLSQL TESMRGLQLK KMKMGLGMGM GLSLSPPSWG LGYGSPRSPS AVRPGFMSLP 300 STPIRAVPRP GYSAFDTNWG TSYEEEPVME RVESGRALRE IIYAKLGREN SLGRVDRVDP 360 ADTVPDVGWV SDMLN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.A00165.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012857882.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 23 | ||||
Swissprot | O82199 | 1e-112 | C3H20_ARATH; Zinc finger CCCH domain-containing protein 20 | ||||
TrEMBL | A0A022PX60 | 0.0 | A0A022PX60_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1857 | 21 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29190.1 | 1e-100 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.A00165.1.p |
Entrez Gene | 105977151 |
Publications ? help Back to Top | |||
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