PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.A00127.1.p
Common NameMIMGU_mgv1a019651mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C2H2
Protein Properties Length: 538aa    MW: 58556.9 Da    PI: 8.3845
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.A00127.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.3e-057597123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C++C+k F r  nL+ H r H
  Migut.A00127.1.p 75 FVCEICSKGFQRDQNLQLHRRGH 97
                      89*******************88 PP
2zf-C2H211.10.0012152174123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC +C+k +  +s+ k H + +
  Migut.A00127.1.p 152 WKCDKCSKKYAVQSDWKAHSKIC 174
                       58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.5E-57497IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.56E-77497No hitNo description
PROSITE profilePS5015710.8877597IPR007087Zinc finger, C2H2
SMARTSM003550.0367597IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
SMARTSM0035538117147IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.5E-4140173IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.56E-7147172No hitNo description
SMARTSM00355150152172IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MLGAVVDENS TMSNLTSAIS NEASISSTSN INTIIQTTQL QPPNSKKRRN LPGNPDPEAE  60
VVALSPKSLM ATNRFVCEIC SKGFQRDQNL QLHRRGHNLP WKLKQRSKQE VVRKKVYVCP  120
EPGCVHHDPA RALGDLTGIK KHFSRKHGEK KWKCDKCSKK YAVQSDWKAH SKICGTREYR  180
CDCGTLFSRR DSFITHRAFC DALAEESSRS ITRDLHNPLH FLSSQTPPIN NNQPHIHGGA  240
ASAFHHPFIP SLKQENQTTF NVHQLPPWLS PLHEQHHHHQ PLFSTSQPSI VQENPNPNTT  300
TTTAAAAAVA GTSTSLMSAT ALLQKASQMG VTMSTKTGHH HQFSGESSGG LIMNRPHNIQ  360
QHVGAPGFYA TSSTSTNNTS TAGLLPSRED MGTDLFVHGL ASFGNKLANV PTGCMQLQNN  420
NNINNNNNGN SFLAFDQDNF DGMLNQQRNG DYSFQEDAHL IMSTAAVRKA GGGSGGGGGG  480
GAANGGGGDD GMTRDFLGLR GFPDRDFLNM AGFEQMGSSS NNYDDHQQAQ NQDPWQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-34148209364Zinc finger protein JACKDAW
5b3h_F4e-34148209364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103114KQRSKQEVVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.A00127.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012857970.10.0PREDICTED: protein indeterminate-domain 7-like
SwissprotQ8H1F51e-120IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A022PXV60.0A0A022PXV6_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-104indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]