PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g494240.1
Common NameMTR_8g494240
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 403aa    MW: 44506.8 Da    PI: 9.6239
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g494240.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.63.4e-09556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE+  l+ +v+++G g W+tI +          R+  ++k++w+++
  Medtr8g494240.1  5 KQKWTSEEEAALKAGVAKHGVGKWRTIIKDPEfnrvlFIRSNVDLKDKWRNL 56
                     79***************************99999988669999999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.089161IPR017930Myb domain
SuperFamilySSF466895.74E-15259IPR009057Homeodomain-like
SMARTSM007171.0E-5459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-12456IPR009057Homeodomain-like
PfamPF002492.5E-6556IPR001005SANT/Myb domain
CDDcd116602.05E-18656No hitNo description
PROSITE profilePS5150422.793118187IPR005818Linker histone H1/H5, domain H15
SMARTSM005264.9E-11119182IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467853.1E-14122197IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.2E-12123188IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005384.0E-7124180IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS500904.008306333IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MGAPKQKWTS EEEAALKAGV AKHGVGKWRT IIKDPEFNRV LFIRSNVDLK DKWRNLSVMG  60
NGSSSREKSK GAIKRLNHPV PKQDDNSMAI TAVTGPSDDD EIVDAQPLQV SRDMPHIPGP  120
KRLDNLILEA ISSLNELGGS NTTTIASFIE DQYRPPADFK KLLSAKLKYL TSSGKLIKVK  180
RRYRIAPTPS YSNRERQPPM LLLEGRQKTS MKLDRVERKY PTKSEIDLEI EKVRSMSAQE  240
AAAYAARAVA DAEAAIAEAE EAAKEAEAAE ADAAAAEAFA EAALKTLKGR NTSETLELVN  300
IGSAPKQKWT SEEEAALKAG ALKHWDTWRI LSEMASGWTS IEKSKVAIKK VHLEAPKQDE  360
NSMAVTPVTP IDDFQPLQVS RDMLQSWSRK CMLNRVYTIQ IG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.174780.0stem
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g494240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1398050.0BT139805.1 Medicago truncatula clone JCVI-FLMt-9K17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013446891.20.0telomere repeat-binding factor 1 isoform X1
RefseqXP_024627975.10.0telomere repeat-binding factor 1 isoform X1
RefseqXP_024627976.10.0telomere repeat-binding factor 1 isoform X1
RefseqXP_024627977.10.0telomere repeat-binding factor 1 isoform X1
RefseqXP_024627978.10.0telomere repeat-binding factor 1 isoform X1
RefseqXP_024627979.10.0telomere repeat-binding factor 1 isoform X1
RefseqXP_024627980.10.0telomere repeat-binding factor 1 isoform X1
RefseqXP_024627981.10.0telomere repeat-binding factor 1 isoform X1
SwissprotQ8VWK42e-81TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A072TUU10.0A0A072TUU1_MEDTR; Myb transcription factor
STRINGXP_004486503.11e-121(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145333101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-81telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  4. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  5. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  6. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]