PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g469430.1
Common NameMTR_8g469430
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HD-ZIP
Protein Properties Length: 287aa    MW: 33303.1 Da    PI: 4.4653
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g469430.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.45e-1889142356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k++++t+eq++ Le+ Fe ++++  e++ +LAk+l+L+ rqV +WFqNrRa+ k
  Medtr8g469430.1  89 KKRRLTNEQVHFLESNFEIENKLEPERKVQLAKELSLQPRQVAIWFQNRRARFK 142
                      56689***********************************************98 PP
2HD-ZIP_I/II128.13.8e-4189179292
      HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      kkrrl++eqv++LE++Fe e+kLeperKv+la+eL lqprqva+WFqnrRAR+ktkqlEkdy +Lk++yd lk + ++L +e+++L+ee+ 
  Medtr8g469430.1  89 KKRRLTNEQVHFLESNFEIENKLEPERKVQLAKELSLQPRQVAIWFQNRRARFKTKQLEKDYGSLKASYDMLKVDYDNLLQENNKLKEEVI 179
                      9**************************************************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.13E-1979146IPR009057Homeodomain-like
PROSITE profilePS5007116.94184144IPR001356Homeobox domain
SMARTSM003891.2E-1686148IPR001356Homeobox domain
CDDcd000864.84E-1587145No hitNo description
PfamPF000462.2E-1589142IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.6E-1991151IPR009057Homeodomain-like
PROSITE patternPS000270119142IPR017970Homeobox, conserved site
PfamPF021832.0E-16144185IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MEEEKLNEKS RSSMTILLQS QKLPYSSELI DSLLVHNQSS KPSFQGSNSM VNVGDMEVKS  60
SSFFQASEKE ENNDDDDENY EVCLQQPGKK RRLTNEQVHF LESNFEIENK LEPERKVQLA  120
KELSLQPRQV AIWFQNRRAR FKTKQLEKDY GSLKASYDML KVDYDNLLQE NNKLKEEVIS  180
LKKRLVPREK QENNLVAKSL DDIISQHKTD VVDSECLQNT DGNQSLVVEP NQSEFSQDEE  240
DILSQNILNV PFIPKVADIG CYDEPHESCC SFQFPFEDQT FYFWSY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136144RRARFKTKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g469430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013445823.10.0homeobox-leucine zipper protein ATHB-54
SwissprotQ022834e-41HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A072TQU20.0A0A072TQU2_MEDTR; Homeobox leucine zipper family protein
STRINGGLYMA08G40705.11e-119(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-43homeobox 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]