PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g467490.1
Common NameMTR_8g467490
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 396aa    MW: 44571.4 Da    PI: 8.2912
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g467490.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.88.5e-53141411128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      + pGfrFhPtdeelv +yLkkk+++++l + e ik++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t++g+Wkatg+d++++s
  Medtr8g467490.1  14 MLPGFRFHPTDEELVGFYLKKKIQQRPLAI-ELIKQLDIYKFDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTRAGFWKATGTDRPIYS 106
                      579************************999.89***************9888999*************************************** PP

              NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + +++ +glkk+Lvfykgra kg+ktdW+mhe+rl
  Medtr8g467490.1 107 SeGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 141
                      956677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-5712173IPR003441NAC domain
PROSITE profilePS5100556.72214173IPR003441NAC domain
PfamPF023657.6E-2616141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MEERNGCEKL EEVMLPGFRF HPTDEELVGF YLKKKIQQRP LAIELIKQLD IYKFDPWDLP  60
KLASTGEKEW YFYCPRDRKY RNSARPNRVT RAGFWKATGT DRPIYSSEGS KCIGLKKSLV  120
FYKGRAAKGV KTDWMMHEFR LPSLIDSSSS PKKYVDKTIP ANESWAICRI FKKTNATAQR  180
ALSHTWVPPL LETSTSNVLT TNDGNHNQFC SSNMILTKKP SFASHSSTST NNLTQNLTSS  240
SSTTLCPLDV PSYNNPIIDP LIYKPLYRLP ISNDQDLNLS TGLVFSSPLE TSCNKTSMDF  300
SSLLLGMSSE VTTSNYIGNL QDHYNNGYPL LANIPNMNVP RVDDQQEMDT VRPIGFPFSV  360
PLNIGDAWKS SSLVWDTSSC TSDEPSSYST TKCYT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-511618019171NO APICAL MERISTEM PROTEIN
1ut4_B3e-511618019171NO APICAL MERISTEM PROTEIN
1ut7_A3e-511618019171NO APICAL MERISTEM PROTEIN
1ut7_B3e-511618019171NO APICAL MERISTEM PROTEIN
3swm_A4e-511618022174NAC domain-containing protein 19
3swm_B4e-511618022174NAC domain-containing protein 19
3swm_C4e-511618022174NAC domain-containing protein 19
3swm_D4e-511618022174NAC domain-containing protein 19
3swp_A4e-511618022174NAC domain-containing protein 19
3swp_B4e-511618022174NAC domain-containing protein 19
3swp_C4e-511618022174NAC domain-containing protein 19
3swp_D4e-511618022174NAC domain-containing protein 19
4dul_A3e-511618019171NAC domain-containing protein 19
4dul_B3e-511618019171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed at globular stage onward in the COL progenitors after the first division of the hypophyseal cell. Later observed in these cells and their descendants, mostly in direct daughter cells. Also detected in the Epi/LRC stem cells and daughters, and is retained in maturing LRC layers. Present in elongated stem cells that are about to divide. {ECO:0000269|PubMed:19081078}.
UniprotTISSUE SPECIFICITY: Expressed in root cap stem cells and their immediate daughters. {ECO:0000269|PubMed:19081078}.
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g467490.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013445709.10.0protein FEZ
SwissprotQ9ZVH01e-109FEZ_ARATH; Protein FEZ
TrEMBLA0A072U1R30.0A0A072U1R3_MEDTR; NAC domain class transcription factor
STRINGXP_004516088.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20133490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-107NAC family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]