PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g466800.1 | ||||||||
Common Name | MTR_8g466800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bHLH | ||||||||
Protein Properties | Length: 445aa MW: 49369.1 Da PI: 6.3802 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.7 | 6.3e-06 | 335 | 373 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Medtr8g466800.1 335 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 373 5778999**********998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.576 | 324 | 373 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.04E-7 | 334 | 377 | No hit | No description |
SuperFamily | SSF47459 | 1.26E-11 | 334 | 391 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0049 | 335 | 379 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-9 | 338 | 381 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MAEEQFQASG NWWETPARNM RFESVEQQQQ QSSSFGGWQQ QQQHHDTMSA SGSSSVVFHD 60 TTQKLQPSDS STSNNDSNLH MMGLGLSSQN IDWNQASILR NEKASEGSFR SMLQENLNST 120 GTNFEQETSG IGIGVELSHQ VNWRQEKLFS NESSSNEFKQ VNRGFSLDQP QFSPQYSSGD 180 SNMISQMDSS ALYGNPSMLQ GLLGTETNQI QPQHGNSFEN RSMNFPYSST SYGLSTNELI 240 PSWSKVSHQN QKQHQQPNNQ LHFTNNAPFW NASETTIKDA SSSFLPPFTT PNFGAQTKNI 300 SEGRDSSAMV KKSGSEPAPK RSKNETPSPL PAFKVRKEKM GDRITALQQL VSPFGKTDTA 360 SVLSEAIEYI KFLHEQVTVL STPYMKSGAP IQHQQSSGKS KEADGPKQDL RSRGLCLVPV 420 SSTFPMTHEP TVEYWTPTFG GTFR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g466800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 2e-54 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013445670.1 | 0.0 | transcription factor bHLH123 isoform X1 | ||||
Swissprot | Q8GXT3 | 8e-82 | BH123_ARATH; Transcription factor bHLH123 | ||||
TrEMBL | A0A072TR48 | 0.0 | A0A072TR48_MEDTR; BHLH transcription factor-like protein | ||||
STRING | AES83743 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1118 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20640.1 | 5e-82 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g466800.1 |
Entrez Gene | 25502666 |
Publications ? help Back to Top | |||
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